Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-143
Cow position: chr1:98534863-98535001 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 1-144
Cow position: chr1:90605609-90605470 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 1-153
Cow position: chr1:29365673-29365821 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 1-156
Cow position: chr1:81860243-81860091 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 149, 53

Conread position: 1-171
Cow position: chr1:60342323-60342488 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 1-178
Cow position: chr1:10469055-10468882 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 61, 42

Conread position: 1-182
Cow position: chr1:31707749-31707926 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-191
Cow position: chr1:22730302-22730119 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 1-191
Cow position: chr1:64595043-64594857 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-222
Cow position: chr1:49132906-49132689 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 1-224
Cow position: chr1:26838222-26838441 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-224
Cow position: chr1:81302383-81302600 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-235
Cow position: chr1:68281816-68282045 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-235
Cow position: chr1:91673499-91673729 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-238
Cow position: chr1:86593037-86592803 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 125, 53

Conread position: 1-239
Cow position: chr1:51980252-51980476 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 1-240
Cow position: chr1:43449245-43449007 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 34

Conread position: 1-241
Cow position: chr1:11289122-11288884 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 130, 53

Conread position: 1-241
Cow position: chr1:83136209-83136447 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 126, 53

Conread position: 1-247
Cow position: chr1:22529545-22529302 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-247
Cow position: chr1:55273775-55273533 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-250
Cow position: chr1:29656453-29656701 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 67

Conread position: 1-251
Cow position: chr1:21377291-21377045 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-251
Cow position: chr1:29428866-29429117 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 146, 53

Conread position: 1-252
Cow position: chr1:3383052-3382805 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr1:31352359-31352119 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 1-252
Cow position: chr1:31646357-31646114 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr1:53519931-53520176 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-252
Cow position: chr1:53578323-53578569 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-252
Cow position: chr1:56191151-56190905 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr1:73762278-73762031 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 1-252
Cow position: chr1:85777192-85776948 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr1:93857789-93858036 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr1:99572299-99572056 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chr1:5505206-5505453 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 166, 37

Conread position: 1-253
Cow position: chr1:6197011-6196765 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:8828288-8828535 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:10725891-10726138 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:13251278-13251030 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:16117132-16116884 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:17938485-17938239 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 0

Conread position: 1-253
Cow position: chr1:18195862-18196110 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 166, 53

Conread position: 1-253
Cow position: chr1:19236230-19235982 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:19441273-19441025 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 167, 53

Conread position: 1-253
Cow position: chr1:20527427-20527675 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:24655097-24655345 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chr1:25053320-25053072 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:28714306-28714554 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:28876364-28876612 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:29037807-29038055 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:31535119-31535367 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:32563268-32563020 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:33716227-33716475 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-253
Cow position: chr1:33854534-33854782 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:33899812-33900054 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 43

Conread position: 1-253
Cow position: chr1:35598543-35598296 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 1-253
Cow position: chr1:38711979-38712227 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:39235236-39234988 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:40088643-40088891 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 156, 41

Conread position: 1-253
Cow position: chr1:40681464-40681216 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:42739963-42740211 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:46613030-46612782 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:52355405-52355157 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:52755265-52755019 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:54933195-54933443 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:55043995-55043749 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:55159116-55158868 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:56726431-56726672 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:58340189-58340429 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:59483596-59483348 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:61727812-61727571 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 249, 52

Conread position: 1-253
Cow position: chr1:62507982-62507730 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 68, 53

Conread position: 1-253
Cow position: chr1:63602521-63602273 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:64942269-64942034 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:66490848-66491096 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:66971892-66971646 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:67078559-67078312 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr1:67831869-67831621 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:68602363-68602115 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr1:68610505-68610263 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 1-253
Cow position: chr1:69406425-69406673 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:69671354-69671106 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:70037974-70037731 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 193, 53

Conread position: 1-253
Cow position: chr1:70051506-70051742 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:72086866-72087114 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr1:75403161-75403409 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:76618207-76617960 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:76873149-76873393 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:77554731-77554488 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 1-253
Cow position: chr1:81308628-81308876 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:82479250-82479498 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:82909564-82909320 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 1-253
Cow position: chr1:85795214-85795457 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:88179125-88179374 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:88328213-88327971 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 199, 53

Conread position: 1-253
Cow position: chr1:89090270-89090022 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:89492963-89492722 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr1:90913096-90913344 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:91105309-91105553 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr1:91890124-91889889 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:91902286-91902534 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr1:100888241-100887993 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr1:102814740-102814988 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-254
Cow position: chr1:19158190-19157941 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-254
Cow position: chr1:66144967-66145216 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position: chr1:25780663-25780914 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 168
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 1-255
Cow position: chr1:33987558-33987306 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position: chr1:71690823-71691070 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position: chr1:86599748-86599494 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 53

Conread position: 1-256
Cow position: chr1:6165249-6165493 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 41, 0

Conread position: 1-256
Cow position: chr1:7837494-7837245 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr1:16973845-16973598 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr1:38279473-38279219 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 43

Conread position: 1-256
Cow position: chr1:40509993-40509740 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 36, 46

Conread position: 1-256
Cow position: chr1:52434292-52434540 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-256
Cow position: chr1:53309390-53309146 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 9

Conread position: 1-256
Cow position: chr1:55780138-55780387 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position: chr1:56425180-56425428 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-256
Cow position: chr1:57397047-57396807 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 54, 0

Conread position: 1-256
Cow position: chr1:57574319-57574069 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr1:88028092-88028339 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-256
Cow position: chr1:89186191-89185946 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 159, 46

Conread position: 1-256
Cow position: chr1:101833664-101833913 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 73, 42

Conread position: 1-257
Cow position: chr1:19884635-19884381 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 28, 54

Conread position: 1-257
Cow position: chr1:38545451-38545202 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 44

Conread position: 1-257
Cow position: chr1:40532604-40532365 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 9

Conread position: 2-133
Cow position: chr1:51393349-51393476 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 2-145
Cow position: chr1:82864085-82864228 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 48

Conread position: 2-163
Cow position: chr1:34684754-34684907 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 2-197
Cow position: chr1:12872187-12871996 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 157
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 41, 0

Conread position: 2-199
Cow position: chr1:25178757-25178564 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 2-199
Cow position: chr1:97285387-97285200 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 2-222
Cow position: chr1:88563646-88563433 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 0

Conread position: 2-234
Cow position: chr1:22909137-22909361 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-238
Cow position: chr1:101853832-101853605 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 2-244
Cow position: chr1:74939005-74939238 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 2-252
Cow position: chr1:5163073-5162825 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 2-253
Cow position: chr1:22012693-22012448 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chr1:25120011-25119767 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position: chr1:55145313-55145560 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 46

Conread position: 2-253
Cow position: chr1:72864218-72864460 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position: chr1:78921745-78921498 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chr1:92920968-92920721 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chr1:102431471-102431224 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 2-254
Cow position: chr1:99117283-99117530 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 73, 45

Conread position: 2-256
Cow position: chr1:14561945-14561698 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 117, 71

Conread position: 2-256
Cow position: chr1:21678068-21678309 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 41

Conread position: 2-256
Cow position: chr1:52054088-52054339 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 41

Conread position: 2-256
Cow position: chr1:57970325-57970094 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 152, 44

Conread position: 2-256
Cow position: chr1:67013294-67013529 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 2-256
Cow position: chr1:77166107-77166346 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 2-256
Cow position: chr1:93112079-93111832 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 45

Conread position: 2-257
Cow position: chr1:22253342-22253592 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 41

Conread position: 2-257
Cow position: chr1:23098905-23099152 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-257
Cow position: chr1:70535195-70534945 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-257
Cow position: chr1:73870120-73870373 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-187
Cow position: chr1:12803361-12803532 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 3-210
Cow position: chr1:40964877-40964675 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 163, 51

Conread position: 3-211
Cow position: chr1:88530705-88530505 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 3-235
Cow position: chr1:3263258-3263486 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 3-240
Cow position: chr1:21114154-21113921 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 3-252
Cow position: chr1:82369689-82369930 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 3-253
Cow position: chr1:61203653-61203899 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr1:79453491-79453245 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr1:94662922-94663168 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr1:99916708-99916954 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 3-255
Cow position: chr1:52371241-52371489 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 40, 0

Conread position: 3-255
Cow position: chr1:52379562-52379810 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 40, 0

Conread position: 3-255
Cow position: chr1:79590120-79590368 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 3-256
Cow position: chr1:5013529-5013280 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 3-256
Cow position: chr1:16797827-16797585 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chr1:53371625-53371887 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 68, 52

Conread position: 3-256
Cow position: chr1:61220701-61220949 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 43

Conread position: 4-232
Cow position: chr1:11854674-11854456 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 4-239
Cow position: chr1:46694637-46694406 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 153, 50

Conread position: 4-253
Cow position: chr1:4337037-4337280 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 4-253
Cow position: chr1:7415756-7416000 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 4-253
Cow position: chr1:82567686-82567927 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 0

Conread position: 4-256
Cow position: chr1:25553074-25553321 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 5-181
Cow position: chr1:31191153-31190982 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 5-186
Cow position: chr1:30440426-30440602 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 5-253
Cow position: chr1:11666270-11666026 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 49, 0

Conread position: 5-253
Cow position: chr1:13579506-13579263 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 150, 49

Conread position: 5-254
Cow position: chr1:61662266-61662022 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 5-255
Cow position: chr1:44127570-44127324 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 246, 42

Conread position: 5-256
Cow position: chr1:37542036-37541792 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 5-256
Cow position: chr1:85142953-85142697 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 39

Conread position: 6-239
Cow position: chr1:77656816-77657050 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 156, 41

Conread position: 14-256
Cow position: chr1:21453609-21453386 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 217, 33

Conread position: 14-256
Cow position: chr1:70388047-70387809 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 19-248
Cow position: chr1:79255274-79255494 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 22-217
Cow position: chr1:82860543-82860723 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 25, 0

Conread position: 24-256
Cow position: chr1:4452797-4452565 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 59

Conread position: 27-227
Cow position: chr1:51982737-51982937 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 14

Conread position: 67-253
Cow position: chr1:56619618-56619427 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 88, 0

Conread position: 73-255
Cow position: chr1:68252664-68252842 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 49, 86

Conread position: 74-253
Cow position: chr1:20098437-20098609 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 78-241
Cow position: chr1:7746273-7746433 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 79-244
Cow position: chr1:100451333-100451170 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 138, 0

Conread position: 79-253
Cow position: chr1:32795542-32795716 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 89-255
Cow position: chr1:66242710-66242544 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 52, 62

Show alignments to all cow chromosomes.