Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-150
Cow position: chr12:42232523-42232668 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 1-180
Cow position: chr12:18936042-18936217 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-184
Cow position: chr12:1408031-1408210 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-188
Cow position: chr12:27929578-27929395 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-204
Cow position: chr12:39283304-39283104 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 117, 42

Conread position: 1-215
Cow position: chr12:42856317-42856108 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1-226
Cow position: chr12:2242774-2242556 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 1-230
Cow position: chr12:9988473-9988249 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 47

Conread position: 1-241
Cow position: chr12:25148405-25148169 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position: chr12:33296846-33297079 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 1-241
Cow position: chr12:36213491-36213727 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position: chr12:46111904-46111668 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-251
Cow position: chr12:28571597-28571835 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 1-252
Cow position: chr12:1476448-1476202 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 1-252
Cow position: chr12:21904572-21904817 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-252
Cow position: chr12:27994314-27994561 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:1511550-1511304 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:3180622-3180870 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:3717060-3716812 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:5226447-5226695 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:10931298-10931547 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 218, 43

Conread position: 1-253
Cow position: chr12:12928693-12928449 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 1-253
Cow position: chr12:14568601-14568363 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:18585886-18586134 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:20459506-20459261 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:21211997-21212244 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:21718964-21718711 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 144, 53

Conread position: 1-253
Cow position: chr12:22202468-22202220 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:22480338-22480586 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:22517639-22517393 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:23138115-23137867 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:25097052-25096806 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr12:25266120-25265872 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:27506436-27506188 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:28013018-28012770 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:28763800-28763554 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr12:31261196-31260948 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:32011564-32011316 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:32656762-32657010 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr12:41338019-41337771 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr12:42604969-42604723 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr12:3070071-3070322 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 178, 35

Conread position: 1-256
Cow position: chr12:25313500-25313249 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position: chr12:41973559-41973309 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-257
Cow position: chr12:8773880-8774129 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-210
Cow position: chr12:1173789-1173586 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 12

Conread position: 2-229
Cow position: chr12:23294449-23294670 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr12:29447021-29447255 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position: chr12:10358910-10359158 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 205, 52

Conread position: 2-253
Cow position: chr12:12754942-12754696 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chr12:13043027-13042780 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 2-257
Cow position: chr12:1774708-1774449 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 165, 50

Conread position: 3-218
Cow position: chr12:35311696-35311482 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 7

Conread position: 3-252
Cow position: chr12:22686712-22686947 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 3-256
Cow position: chr12:1093117-1093364 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 37, 13

Conread position: 3-256
Cow position: chr12:19871428-19871679 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 115, 40

Conread position: 3-256
Cow position: chr12:31329114-31328865 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chr12:48416531-48416278 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 64

Conread position: 4-253
Cow position: chr12:8172124-8172366 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 5-252
Cow position: chr12:24557795-24558034 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 6-252
Cow position: chr12:47803391-47803613 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 6-255
Cow position: chr12:15231253-15231490 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 9-166
Cow position: chr12:41595442-41595596 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 132
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 13-256
Cow position: chr12:2285497-2285733 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 22-250
Cow position: chr12:6954556-6954774 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 50-256
Cow position: chr12:1501352-1501545 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 78-191
Cow position: chr12:42124461-42124574 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 88
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.