Cow genome map
| Conread name: | rcte39_n4.y1 |
| Conread position: | 1-144 |
| Cow position: | chr13:30243332-30243471 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-188 |
| Cow position: | chr13:504339-504522 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-235 |
| Cow position: | chr13:32955455-32955229 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-235 |
| Cow position: | chr13:32982396-32982170 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-237 |
| Cow position: | chr13:18761260-18761025 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 1-237 |
| Cow position: | chr13:49805937-49805710 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-238 |
| Cow position: | chr13:7609150-7609384 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 53 |
| Conread position: | 1-241 |
| Cow position: | chr13:11826747-11826522 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-241 |
| Cow position: | chr13:34376524-34376288 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-241 |
| Cow position: | chr13:42114988-42114761 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-242 |
| Cow position: | chr13:30652280-30652043 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:1882506-1882260 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 39 |
| Conread position: | 1-253 |
| Cow position: | chr13:6342887-6343135 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:9537246-9537494 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:14302981-14302734 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:16248936-16248688 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:18330120-18329872 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:31608437-31608184 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:32734182-32733934 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:33161946-33162193 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:33522953-33522703 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 178, 53 |
| Conread position: | 1-253 |
| Cow position: | chr13:34870965-34871213 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:35540409-35540654 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:35760547-35760795 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:36936736-36936984 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:46055947-46056195 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:48627556-48627800 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:58718561-58718798 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 197, 53 |
| Conread position: | 1-253 |
| Cow position: | chr13:60646581-60646333 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr13:61954248-61954495 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-254 |
| Cow position: | chr13:838402-838153 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-254 |
| Cow position: | chr13:38897319-38897558 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 1-255 |
| Cow position: | chr13:14400071-14399820 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 1-255 |
| Cow position: | chr13:30241570-30241820 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-255 |
| Cow position: | chr13:34190252-34190498 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-255 |
| Cow position: | chr13:50079563-50079308 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 204, 53 |
| Conread position: | 1-256 |
| Cow position: | chr13:3784134-3784385 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 37 |
| Conread position: | 1-256 |
| Cow position: | chr13:9571008-9570758 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-257 |
| Cow position: | chr13:34298585-34298837 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-257 |
| Cow position: | chr13:54238438-54238191 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 42 |
| Conread position: | 2-166 |
| Cow position: | chr13:19566727-19566887 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-192 |
| Cow position: | chr13:21401841-21402024 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-208 |
| Cow position: | chr13:15429929-15429736 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-221 |
| Cow position: | chr13:18097616-18097401 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-241 |
| Cow position: | chr13:26381723-26381964 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 40 |
| Conread position: | 2-252 |
| Cow position: | chr13:5717684-5717440 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 186, 61 |
| Conread position: | 2-253 |
| Cow position: | chr13:561380-561136 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-253 |
| Cow position: | chr13:6665122-6664875 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-253 |
| Cow position: | chr13:6719158-6718911 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-253 |
| Cow position: | chr13:8781914-8782160 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-253 |
| Cow position: | chr13:9048601-9048854 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 178, 52 |
| Conread position: | 2-253 |
| Cow position: | chr13:32774345-32774099 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-255 |
| Cow position: | chr13:19843476-19843720 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 160, 43 |
| Conread position: | 2-256 |
| Cow position: | chr13:22907261-22907012 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-256 |
| Cow position: | chr13:23266823-23266576 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-256 |
| Cow position: | chr13:34928162-34928410 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 3-178 |
| Cow position: | chr13:46427728-46427898 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 3-181 |
| Cow position: | chr13:13126708-13126534 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-186 |
| Cow position: | chr13:20538536-20538358 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-189 |
| Cow position: | chr13:31730564-31730382 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-211 |
| Cow position: | chr13:5622690-5622500 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-252 |
| Cow position: | chr13:39951625-39951863 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 195, 50 |
| Conread position: | 3-253 |
| Cow position: | chr13:20563974-20563735 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 3-253 |
| Cow position: | chr13:34905566-34905332 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 3-257 |
| Cow position: | chr13:20571702-20571458 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-148 |
| Cow position: | chr13:42250485-42250342 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 43 |
| Conread position: | 6-248 |
| Cow position: | chr13:47189027-47189263 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 40 |
| Conread position: | 10-253 |
| Cow position: | chr13:32794329-32794091 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 13-253 |
| Cow position: | chr13:3314640-3314876 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 26-253 |
| Cow position: | chr13:25825969-25825733 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 44-255 |
| Cow position: | chr13:14716406-14716609 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 49-252 |
| Cow position: | chr13:43593886-43594082 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 56-255 |
| Cow position: | chr13:17456158-17456353 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.