Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-130
Cow position: chr14:36289173-36289298 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 1-138
Cow position: chr14:46224823-46224690 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 54, 0

Conread position: 1-188
Cow position: chr14:33679993-33680175 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 1-188
Cow position: chr14:38435906-38436089 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-190
Cow position: chr14:29773254-29773065 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 54

Conread position: 1-199
Cow position: chr14:16916852-16916658 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-205
Cow position: chr14:44076810-44076611 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-218
Cow position: chr14:41478624-41478832 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-218
Cow position: chr14:48491444-48491647 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 0

Conread position: 1-223
Cow position: chr14:24797815-24797597 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-235
Cow position: chr14:9449657-9449427 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-239
Cow position: chr14:35382614-35382390 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 1-241
Cow position: chr14:11462204-11461969 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 7, 0

Conread position: 1-250
Cow position: chr14:37882868-37883117 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 60, 154

Conread position: 1-252
Cow position: chr14:17219198-17219438 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 178, 53

Conread position: 1-252
Cow position: chr14:22690021-22689773 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 125, 53

Conread position: 1-252
Cow position: chr14:24922658-24922905 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 46, 71

Conread position: 1-253
Cow position: chr14:7475732-7475979 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr14:8998489-8998731 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 72

Conread position: 1-253
Cow position: chr14:9482826-9483070 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:11151041-11150793 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:12740174-12739926 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:12903209-12903456 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 199, 53

Conread position: 1-253
Cow position: chr14:13581744-13581992 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chr14:13860666-13860413 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 121, 53

Conread position: 1-253
Cow position: chr14:17690003-17690243 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:22026899-22026652 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr14:23254463-23254221 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:24895546-24895794 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 0

Conread position: 1-253
Cow position: chr14:24980422-24980670 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:28350823-28350575 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 0

Conread position: 1-253
Cow position: chr14:28993473-28993230 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:29044798-29044550 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:30476466-30476221 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 30, 0

Conread position: 1-253
Cow position: chr14:32449831-32450079 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr14:32500047-32500284 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:34168173-34168421 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:34354425-34354672 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chr14:34667976-34667727 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 182, 53

Conread position: 1-253
Cow position: chr14:38047055-38047299 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:38391119-38391366 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr14:41081768-41081519 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 117, 53

Conread position: 1-253
Cow position: chr14:41220173-41219925 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:41717352-41717097 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 113, 42

Conread position: 1-253
Cow position: chr14:45025754-45025506 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr14:46225055-46225302 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 0

Conread position: 1-253
Cow position: chr14:46302779-46303028 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 54, 0

Conread position: 1-253
Cow position: chr14:46960262-46960510 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:48251573-48251333 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 1-253
Cow position: chr14:50069323-50069075 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr14:50142148-50141901 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 1-256
Cow position: chr14:10310434-10310685 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr14:12066573-12066322 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr14:14786441-14786191 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 1-256
Cow position: chr14:44382154-44382404 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 2-241
Cow position: chr14:9876406-9876174 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-241
Cow position: chr14:31400610-31400377 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-250
Cow position: chr14:23528123-23527874 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 171

Conread position: 2-253
Cow position: chr14:13619566-13619323 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 209, 52

Conread position: 2-253
Cow position: chr14:34906401-34906648 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position: chr14:48572478-48572231 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 2-255
Cow position: chr14:8517390-8517634 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 2-255
Cow position: chr14:17610689-17610935 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 44

Conread position: 2-255
Cow position: chr14:32580154-32580400 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 0

Conread position: 2-256
Cow position: chr14:26496898-26496645 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 70

Conread position: 2-256
Cow position: chr14:37257005-37257240 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 2-256
Cow position: chr14:45186959-45186708 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 46

Conread position: 2-256
Cow position: chr14:46303725-46303961 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 224, 53

Conread position: 2-257
Cow position: chr14:13811159-13810911 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 32, 0

Conread position: 2-257
Cow position: chr14:24836682-24836937 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 74

Conread position: 3-199
Cow position: chr14:16997161-16996969 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 3-236
Cow position: chr14:46636658-46636435 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 38

Conread position: 3-253
Cow position: chr14:17762511-17762265 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr14:47873247-47873001 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chr14:5500811-5501053 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chr14:30663164-30662911 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 63

Conread position: 4-232
Cow position: chr14:47603054-47603268 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 4-234
Cow position: chr14:48828101-48828328 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 114, 50

Conread position: 4-253
Cow position: chr14:193027-193272 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 5-226
Cow position: chr14:21541035-21540823 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 41, 0

Conread position: 5-253
Cow position: chr14:11474442-11474199 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 5-253
Cow position: chr14:42849723-42849478 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 35

Conread position: 6-239
Cow position: chr14:30738529-30738758 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 37, 0

Conread position: 6-256
Cow position: chr14:19489861-19490109 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 40

Conread position: 7-253
Cow position: chr14:7646996-7647237 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 10-257
Cow position: chr14:45848041-45848283 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 13-256
Cow position: chr14:2297978-2298212 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 34, 0

Conread position: 13-256
Cow position: chr14:48495125-48495361 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 18-255
Cow position: chr14:26405721-26405957 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 175, 35

Conread position: 21-241
Cow position: chr14:45299824-45300033 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 27-256
Cow position: chr14:39822184-39821961 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 68-242
Cow position: chr14:46084943-46085117 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 35

Conread position: 79-257
Cow position: chr14:40229666-40229844 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 101-256
Cow position: chr14:13386312-13386157 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.