Cow genome map
| Conread name: | rcte39_n4.y1 |
| Conread position: | 1-166 |
| Cow position: | chr17:28024811-28024650 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-185 |
| Cow position: | chr17:14232613-14232432 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 177, 53 |
| Conread position: | 1-199 |
| Cow position: | chr17:22249161-22248967 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-240 |
| Cow position: | chr17:51008-50779 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-240 |
| Cow position: | chr17:38991844-38992078 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-241 |
| Cow position: | chr17:2177071-2177306 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-250 |
| Cow position: | chr17:4635684-4635447 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:138699-138941 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:184238-184486 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:1672390-1672636 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:2201388-2201636 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:2244975-2244733 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:2265280-2265527 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:2583483-2583726 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:4211021-4211268 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:4480791-4480543 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 206, 46 |
| Conread position: | 1-253 |
| Cow position: | chr17:6122874-6123122 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:6262947-6263193 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:8222796-8223044 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:14029255-14029008 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 186, 53 |
| Conread position: | 1-253 |
| Cow position: | chr17:15328372-15328620 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:15438882-15439130 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:15809078-15809326 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:18099983-18099735 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:18777739-18777493 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 159, 53 |
| Conread position: | 1-253 |
| Cow position: | chr17:20084722-20084471 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 1-253 |
| Cow position: | chr17:21666095-21666338 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:21766988-21767229 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 158, 46 |
| Conread position: | 1-253 |
| Cow position: | chr17:21770771-21771019 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:23321328-23321081 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:24026892-24026646 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 236, 53 |
| Conread position: | 1-253 |
| Cow position: | chr17:25739387-25739635 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:27791691-27791453 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:29824870-29824621 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 1-253 |
| Cow position: | chr17:34236160-34235912 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr17:40810842-40811082 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-256 |
| Cow position: | chr17:1311671-1311421 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-256 |
| Cow position: | chr17:4085158-4085405 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-256 |
| Cow position: | chr17:14250017-14249763 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 166, 42 |
| Conread position: | 1-257 |
| Cow position: | chr17:18123579-18123333 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-257 |
| Cow position: | chr17:20094067-20093817 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-212 |
| Cow position: | chr17:10270261-10270061 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-238 |
| Cow position: | chr17:8205038-8205275 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 2-252 |
| Cow position: | chr17:27978193-27978441 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 2-253 |
| Cow position: | chr17:2839117-2839357 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-253 |
| Cow position: | chr17:14212926-14212681 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-255 |
| Cow position: | chr17:29083269-29083509 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 203, 41 |
| Conread position: | 2-256 |
| Cow position: | chr17:145106-144865 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-256 |
| Cow position: | chr17:13674390-13674150 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 189, 53 |
| Conread position: | 2-256 |
| Cow position: | chr17:20209789-20209533 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 2-256 |
| Cow position: | chr17:36747429-36747187 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-256 |
| Cow position: | chr17:37415796-37415550 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-257 |
| Cow position: | chr17:31232769-31233013 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-228 |
| Cow position: | chr17:15351138-15351350 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 208, 51 |
| Conread position: | 3-248 |
| Cow position: | chr17:2178941-2179179 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 224, 43 |
| Conread position: | 3-253 |
| Cow position: | chr17:17128098-17128343 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-256 |
| Cow position: | chr17:1457286-1457038 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-252 |
| Cow position: | chr17:254191-254431 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-253 |
| Cow position: | chr17:2698647-2698892 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 4-256 |
| Cow position: | chr17:38828976-38829222 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 5-238 |
| Cow position: | chr17:13921337-13921555 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-256 |
| Cow position: | chr17:2078736-2078980 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-256 |
| Cow position: | chr17:7615592-7615339 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 6-253 |
| Cow position: | chr17:29156469-29156712 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 10-256 |
| Cow position: | chr17:13990162-13989923 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 13-230 |
| Cow position: | chr17:5380054-5380267 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 14-191 |
| Cow position: | chr17:11338061-11337892 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 14-256 |
| Cow position: | chr17:20215187-20215422 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 18-253 |
| Cow position: | chr17:15558680-15558911 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 19-144 |
| Cow position: | chr17:43452961-43452825 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 22-201 |
| Cow position: | chr17:44865201-44865027 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 28-253 |
| Cow position: | chr17:18814270-18814495 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 40-241 |
| Cow position: | chr17:32183448-32183638 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 44-244 |
| Cow position: | chr17:12290355-12290156 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 130, 37 |
Show alignments to all cow chromosomes.