Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-178
Cow position: chr21:3804387-3804215 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 1-182
Cow position: chr21:2664772-2664595 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1-197
Cow position: chr21:1284553-1284362 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 1-199
Cow position: chr21:39428795-39428989 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-229
Cow position: chr21:27375499-27375723 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 126, 53

Conread position: 1-230
Cow position: chr21:27522429-27522211 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-232
Cow position: chr21:27343005-27342782 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-241
Cow position: chr21:1057855-1058091 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-241
Cow position: chr21:2293789-2293553 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-241
Cow position: chr21:4898571-4898335 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position: chr21:13302602-13302824 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 54, 0

Conread position: 1-241
Cow position: chr21:18792046-18791806 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 147, 45

Conread position: 1-241
Cow position: chr21:30627686-30627454 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-242
Cow position: chr21:4079416-4079648 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 42, 0

Conread position: 1-250
Cow position: chr21:18787116-18786875 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 1-250
Cow position: chr21:25190044-25190290 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 184, 53

Conread position: 1-251
Cow position: chr21:9208706-9208948 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr21:10853658-10853905 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr21:20244207-20243960 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr21:34657387-34657630 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 33, 55

Conread position: 1-253
Cow position: chr21:149540-149788 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:1195931-1196178 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 202, 53

Conread position: 1-253
Cow position: chr21:2514244-2514488 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:2768450-2768202 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 165, 53

Conread position: 1-253
Cow position: chr21:3782166-3782413 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:5010077-5009828 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 237, 53

Conread position: 1-253
Cow position: chr21:5020539-5020783 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:6966079-6965831 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:7155778-7156013 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 8, 54

Conread position: 1-253
Cow position: chr21:10570680-10570928 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:11509334-11509582 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:13735768-13735521 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:17144081-17144329 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:19351468-19351220 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:19627315-19627069 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:23329950-23329702 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:27066206-27065958 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:27148159-27147911 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:27608309-27608061 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:31512877-31512630 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr21:33316973-33316725 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr21:36376383-36376622 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:36506445-36506198 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:42917186-42917434 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:43404044-43403797 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr21:47648733-47648983 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 53

Conread position: 1-253
Cow position: chr21:47977660-47977908 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr21:49655790-49655542 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position: chr21:27125325-27125075 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-255
Cow position: chr21:33965326-33965088 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr21:3046729-3046969 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr21:3766377-3766126 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 165, 53

Conread position: 1-256
Cow position: chr21:4188929-4189186 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 166, 42

Conread position: 1-256
Cow position: chr21:9010715-9010463 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-256
Cow position: chr21:9895755-9896001 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 1-256
Cow position: chr21:16277795-16278045 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr21:18819243-18818989 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 74, 46

Conread position: 1-256
Cow position: chr21:28597985-28598234 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 129, 39

Conread position: 1-256
Cow position: chr21:30966550-30966299 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-256
Cow position: chr21:39059926-39059686 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr21:46974337-46974090 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-257
Cow position: chr21:2503136-2503387 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 52

Conread position: 2-162
Cow position: chr21:37123020-37122875 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 2-239
Cow position: chr21:32573374-32573608 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 44

Conread position: 2-251
Cow position: chr21:27263081-27263321 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-253
Cow position: chr21:81141-81379 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 2-253
Cow position: chr21:28915581-28915335 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chr21:39400630-39400876 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 2-253
Cow position: chr21:48234921-48234679 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 161, 41

Conread position: 2-255
Cow position: chr21:31275737-31275985 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-255
Cow position: chr21:37298534-37298782 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-256
Cow position: chr21:3253017-3253277 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 41

Conread position: 2-256
Cow position: chr21:4586285-4586033 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 161, 52

Conread position: 2-256
Cow position: chr21:20911031-20910787 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 0

Conread position: 2-257
Cow position: chr21:6623205-6623458 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 194, 35

Conread position: 3-134
Cow position: chr21:8419452-8419573 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 3-242
Cow position: chr21:18285201-18285435 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr21:25986811-25987055 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chr21:36534813-36534567 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chr21:28476697-28476937 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 4-253
Cow position: chr21:2419593-2419835 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 4-256
Cow position: chr21:22719702-22719457 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 42

Conread position: 5-204
Cow position: chr21:14727084-14727276 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 143, 41

Conread position: 13-175
Cow position: chr21:8617803-8617645 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 13-256
Cow position: chr21:4097980-4098217 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 16-244
Cow position: chr21:32534234-32534452 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 25-250
Cow position: chr21:4722069-4722275 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 25-256
Cow position: chr21:2928457-2928229 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 129, 28

Conread position: 78-256
Cow position: chr21:4282947-4282767 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 153

Conread position: 80-253
Cow position: chr21:33901236-33901063 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 84-253
Cow position: chr21:13111650-13111481 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 91-256
Cow position: chr21:29213342-29213502 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.