Cow genome map
| Conread name: | rcte39_n4.y1 |
| Conread position: | 1-160 |
| Cow position: | chr24:26388587-26388432 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-187 |
| Cow position: | chr24:40519297-40519115 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-217 |
| Cow position: | chr24:12240179-12240398 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 1-232 |
| Cow position: | chr24:36721750-36721978 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-236 |
| Cow position: | chr24:25439507-25439741 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 1-241 |
| Cow position: | chr24:6524303-6524538 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-241 |
| Cow position: | chr24:15667441-15667207 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-241 |
| Cow position: | chr24:16081181-16080945 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-241 |
| Cow position: | chr24:36779577-36779812 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 165, 53 |
| Conread position: | 1-242 |
| Cow position: | chr24:38813950-38814188 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 1-250 |
| Cow position: | chr24:6020772-6020527 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 224, 53 |
| Conread position: | 1-250 |
| Cow position: | chr24:8607635-8607880 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-251 |
| Cow position: | chr24:11104846-11104600 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-252 |
| Cow position: | chr24:5910113-5910371 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 187 |
| Conread position: | 1-252 |
| Cow position: | chr24:36268499-36268253 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 167, 53 |
| Conread position: | 1-253 |
| Cow position: | chr24:3793788-3794036 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:3850901-3851149 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:5863049-5862800 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 156, 53 |
| Conread position: | 1-253 |
| Cow position: | chr24:5929085-5929333 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:6035875-6035627 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:6068037-6067790 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:6412784-6413032 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:6442744-6442991 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:9549570-9549816 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:12147281-12147035 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:12696817-12696569 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:14250277-14250030 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:14760199-14760447 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:20283906-20283658 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:20604055-20604303 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:22047763-22047515 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:31067739-31067491 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:32361547-32361306 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:32853518-32853766 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:35823899-35823651 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:36028209-36027961 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:39067563-39067314 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:39956797-39956556 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 1-253 |
| Cow position: | chr24:40467107-40466859 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-255 |
| Cow position: | chr24:18112761-18113011 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-256 |
| Cow position: | chr24:6415468-6415719 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-256 |
| Cow position: | chr24:12119656-12119412 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-256 |
| Cow position: | chr24:13191467-13191717 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 1-256 |
| Cow position: | chr24:27148410-27148666 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 42 |
| Conread position: | 1-256 |
| Cow position: | chr24:33937235-33937485 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 165, 53 |
| Conread position: | 1-256 |
| Cow position: | chr24:36036520-36036274 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-256 |
| Cow position: | chr24:45086829-45087080 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 1-257 |
| Cow position: | chr24:31381705-31381945 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-192 |
| Cow position: | chr24:36404629-36404811 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-234 |
| Cow position: | chr24:21058732-21058960 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-236 |
| Cow position: | chr24:17764292-17764068 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 172, 44 |
| Conread position: | 2-237 |
| Cow position: | chr24:18267179-18266955 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-252 |
| Cow position: | chr24:43634421-43634664 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 2-252 |
| Cow position: | chr24:45009494-45009736 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-253 |
| Cow position: | chr24:17105570-17105322 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 218, 36 |
| Conread position: | 2-255 |
| Cow position: | chr24:7748933-7749176 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-256 |
| Cow position: | chr24:11462704-11462450 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 212 |
| Conread position: | 2-256 |
| Cow position: | chr24:28336750-28336506 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-256 |
| Cow position: | chr24:36726462-36726709 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-222 |
| Cow position: | chr24:42944348-42944145 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-229 |
| Cow position: | chr24:36556273-36556059 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-253 |
| Cow position: | chr24:30870661-30870415 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-256 |
| Cow position: | chr24:17310121-17309868 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 155, 40 |
| Conread position: | 3-256 |
| Cow position: | chr24:32608619-32608868 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-256 |
| Cow position: | chr24:40347766-40347518 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 5-252 |
| Cow position: | chr24:41062763-41063007 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-255 |
| Cow position: | chr24:31356906-31357146 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-241 |
| Cow position: | chr24:30893559-30893326 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 65 |
| Conread position: | 10-178 |
| Cow position: | chr24:6543893-6544055 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 10-256 |
| Cow position: | chr24:14336180-14336418 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 18-256 |
| Cow position: | chr24:30765645-30765880 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 19-256 |
| Cow position: | chr24:34760831-34761066 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 19-256 |
| Cow position: | chr24:39258173-39258399 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-256 |
| Cow position: | chr24:12991106-12991333 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 78-238 |
| Cow position: | chr24:16646550-16646395 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 79-235 |
| Cow position: | chr24:11081400-11081244 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-235 |
| Cow position: | chr24:12446874-12447030 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.