Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-121
Cow position: chr25:21949801-21949917 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-154
Cow position: chr25:35571822-35571971 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 1-162
Cow position: chr25:35626228-35626073 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 136, 47

Conread position: 1-178
Cow position: chr25:28420702-28420527 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-181
Cow position: chr25:41353411-41353236 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 154, 53

Conread position: 1-199
Cow position: chr25:14756406-14756214 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 110, 36

Conread position: 1-237
Cow position: chr25:20633764-20633994 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position: chr25:17993138-17992908 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-244
Cow position: chr25:23393876-23394107 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-248
Cow position: chr25:13960070-13960308 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-248
Cow position: chr25:27231362-27231601 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-250
Cow position: chr25:26353781-26353537 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 231, 46

Conread position: 1-251
Cow position: chr25:37593408-37593651 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-252
Cow position: chr25:12939204-12938957 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:6955071-6955318 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr25:11955834-11956081 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-253
Cow position: chr25:13786977-13787225 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:17554256-17554011 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr25:17657623-17657870 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr25:18269476-18269728 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 151, 53

Conread position: 1-253
Cow position: chr25:18886478-18886233 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:19337322-19337076 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:19923530-19923772 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:25480595-25480359 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chr25:26282028-26282275 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:28862875-28863123 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:29358009-29357761 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:29802742-29802494 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:32577659-32577411 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:34503219-34502971 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chr25:39386826-39386578 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chr25:41135742-41135497 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr25:10013058-10012808 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 24

Conread position: 1-256
Cow position: chr25:16922786-16922537 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-256
Cow position: chr25:22151108-22151359 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chr25:23326023-23325774 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 1-256
Cow position: chr25:33838386-33838630 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position: chr25:40322287-40322036 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position: chr25:41098188-41097944 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-257
Cow position: chr25:12082343-12082096 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 2-135
Cow position: chr25:30340357-30340225 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 72

Conread position: 2-209
Cow position: chr25:10634002-10633802 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 152, 44

Conread position: 2-235
Cow position: chr25:26922845-26923071 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 2-235
Cow position: chr25:26931100-26931329 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 0

Conread position: 2-254
Cow position: chr25:35553671-35553920 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 182, 41

Conread position: 2-256
Cow position: chr25:33262629-33262882 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 42, 73

Conread position: 2-257
Cow position: chr25:20075484-20075732 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 41

Conread position: 3-256
Cow position: chr25:3172394-3172164 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 3-256
Cow position: chr25:26896057-26896300 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 3-256
Cow position: chr25:29313313-29313068 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 5-256
Cow position: chr25:33688203-33687953 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 67

Conread position: 14-253
Cow position: chr25:393276-393512 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 156

Conread position: 14-256
Cow position: chr25:18486478-18486713 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 15-256
Cow position: chr25:34667964-34668202 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 103, 27

Show alignments to all cow chromosomes.