Cow genome map
| Conread name: | rcte39_n4.y1 |
| Conread position: | 1-144 |
| Cow position: | chr27:24054922-24055058 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-148 |
| Cow position: | chr27:9989989-9989845 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-177 |
| Cow position: | chr27:25885039-25885208 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 1-218 |
| Cow position: | chr27:15697564-15697770 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-235 |
| Cow position: | chr27:1081948-1081719 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-235 |
| Cow position: | chr27:27045391-27045618 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-236 |
| Cow position: | chr27:15272854-15272631 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-236 |
| Cow position: | chr27:21350062-21350292 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-241 |
| Cow position: | chr27:14380518-14380753 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-242 |
| Cow position: | chr27:10306332-10306568 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 1-248 |
| Cow position: | chr27:11434390-11434624 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-252 |
| Cow position: | chr27:344716-344469 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-252 |
| Cow position: | chr27:19932352-19932096 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 130, 46 |
| Conread position: | 1-253 |
| Cow position: | chr27:165705-165458 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:2331717-2331965 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:3653486-3653238 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:3990586-3990338 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 166, 53 |
| Conread position: | 1-253 |
| Cow position: | chr27:4982586-4982834 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:5914147-5914390 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:5925487-5925724 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:11481145-11481393 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:13353520-13353768 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:13901338-13901586 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:15033677-15033429 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:15634128-15633881 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:16031183-16030935 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr27:24296055-24295798 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 1-253 |
| Cow position: | chr27:26330146-26330394 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 166, 53 |
| Conread position: | 1-253 |
| Cow position: | chr27:30036083-30036333 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 42 |
| Conread position: | 1-256 |
| Cow position: | chr27:4331526-4331274 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 1-256 |
| Cow position: | chr27:5983816-5983565 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-256 |
| Cow position: | chr27:15870796-15870554 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 248, 42 |
| Conread position: | 1-256 |
| Cow position: | chr27:20764963-20765202 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-256 |
| Cow position: | chr27:27729273-27729026 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-256 |
| Cow position: | chr27:27930422-27930661 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 188, 51 |
| Conread position: | 2-147 |
| Cow position: | chr27:18473456-18473594 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-179 |
| Cow position: | chr27:16627573-16627742 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 2-201 |
| Cow position: | chr27:25971386-25971190 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 2-210 |
| Cow position: | chr27:1588298-1588500 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-214 |
| Cow position: | chr27:8429218-8429434 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 2-240 |
| Cow position: | chr27:27557016-27557253 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 2-248 |
| Cow position: | chr27:8592596-8592843 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 2-253 |
| Cow position: | chr27:2557774-2557531 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-253 |
| Cow position: | chr27:25112377-25112618 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 40 |
| Conread position: | 2-253 |
| Cow position: | chr27:27291604-27291855 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 2-254 |
| Cow position: | chr27:30783119-30783366 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-255 |
| Cow position: | chr27:15405840-15406085 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 172, 45 |
| Conread position: | 2-256 |
| Cow position: | chr27:22329716-22329955 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 3-253 |
| Cow position: | chr27:1188884-1189124 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-253 |
| Cow position: | chr27:8427074-8427312 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 5-241 |
| Cow position: | chr27:4824041-4824274 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 121, 42 |
| Conread position: | 6-256 |
| Cow position: | chr27:30677860-30677621 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 7-199 |
| Cow position: | chr27:526155-526343 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 13-256 |
| Cow position: | chr27:13183050-13182820 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 14-244 |
| Cow position: | chr27:26552162-26551939 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 157, 30 |
| Conread position: | 19-257 |
| Cow position: | chr27:21451674-21451909 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.