Cow genome map
| Conread name: | rcte39_n4.y1 |
| Conread position: | 1-148 |
| Cow position: | chr29:5787261-5787118 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-199 |
| Cow position: | chr29:13585446-13585634 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-199 |
| Cow position: | chr29:35956071-35955881 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-217 |
| Cow position: | chr29:16101887-16101675 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-230 |
| Cow position: | chr29:7604622-7604858 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 1-236 |
| Cow position: | chr29:9079566-9079335 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-241 |
| Cow position: | chr29:960432-960668 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-242 |
| Cow position: | chr29:27259654-27259415 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 43 |
| Conread position: | 1-247 |
| Cow position: | chr29:43517750-43517508 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:45233-44987 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:2103078-2103319 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:43326745-43326991 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:45651310-45651068 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:108615-108860 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:1742735-1742978 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:2838105-2837857 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:5785725-5785973 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:6218576-6218332 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 1-253 |
| Cow position: | chr29:7427911-7427663 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:7723897-7724144 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:7811966-7811717 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 159, 53 |
| Conread position: | 1-253 |
| Cow position: | chr29:13099401-13099651 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:19515114-19514860 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 214, 53 |
| Conread position: | 1-253 |
| Cow position: | chr29:19620038-19619790 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:19657112-19657360 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:21474380-21474628 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:23979941-23980189 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:26161602-26161356 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:28657137-28656889 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:28697148-28696900 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:31184607-31184855 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:31765271-31765518 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:34780755-34780506 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:34794632-34794380 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 1-253 |
| Cow position: | chr29:35002443-35002195 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:35076355-35076603 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:35273808-35273560 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:38229238-38229486 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:38409428-38409676 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:40498645-40498397 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:45462464-45462710 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-255 |
| Cow position: | chr29:10452585-10452335 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-256 |
| Cow position: | chr29:2299088-2298837 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 1-256 |
| Cow position: | chr29:2401919-2402168 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-256 |
| Cow position: | chr29:2745271-2745026 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 155, 52 |
| Conread position: | 1-256 |
| Cow position: | chr29:14037618-14037374 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 206, 47 |
| Conread position: | 1-256 |
| Cow position: | chr29:14313918-14313667 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 218, 46 |
| Conread position: | 1-256 |
| Cow position: | chr29:34737461-34737220 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-256 |
| Cow position: | chr29:36634118-36633877 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-212 |
| Cow position: | chr29:4366392-4366596 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-241 |
| Cow position: | chr29:13849715-13849483 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 2-253 |
| Cow position: | chr29:4864551-4864799 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 2-253 |
| Cow position: | chr29:21535688-21535444 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 2-253 |
| Cow position: | chr29:24577885-24578131 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-253 |
| Cow position: | chr29:32962547-32962784 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-253 |
| Cow position: | chr29:39076487-39076239 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 173, 52 |
| Conread position: | 2-255 |
| Cow position: | chr29:9939569-9939313 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 2-256 |
| Cow position: | chr29:11786235-11786485 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 45 |
| Conread position: | 2-256 |
| Cow position: | chr29:32806301-32806543 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 156, 46 |
| Conread position: | 2-257 |
| Cow position: | chr29:3106537-3106779 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 21 |
| Conread position: | 2-257 |
| Cow position: | chr29:32643800-32644035 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-257 |
| Cow position: | chr29:42940210-42940461 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 3-253 |
| Cow position: | chr29:8623975-8623729 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-253 |
| Cow position: | chr29:10820482-10820236 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-185 |
| Cow position: | chr29:29589762-29589586 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 4-186 |
| Cow position: | chr29:5978086-5977908 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 5-247 |
| Cow position: | chr29:36208931-36209167 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 161, 42 |
| Conread position: | 5-253 |
| Cow position: | chr29:32543373-32543616 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 13-256 |
| Cow position: | chr29:6872039-6871801 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 30 |
| Conread position: | 44-192 |
| Cow position: | chr29:13640260-13640114 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 79-253 |
| Cow position: | chr29:13923383-13923558 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 100-254 |
| Cow position: | chr29:17458828-17458674 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.