Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-139
Cow position:
Alignm length: 139
Alignm identity: 115
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-143
Cow position:
Alignm length: 143
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 1-166
Cow position:
Alignm length: 166
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-182
Cow position:
Alignm length: 182
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 1-204
Cow position:
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-205
Cow position:
Alignm length: 205
Alignm identity: 154
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 42, 0

Conread position: 1-217
Cow position:
Alignm length: 218
Alignm identity: 160
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 166, 53

Conread position: 1-235
Cow position:
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 1-235
Cow position:
Alignm length: 235
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-235
Cow position:
Alignm length: 235
Alignm identity: 173
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-239
Cow position:
Alignm length: 239
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 0

Conread position: 1-240
Cow position:
Alignm length: 240
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-241
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 1-241
Cow position:
Alignm length: 242
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 159, 53

Conread position: 1-241
Cow position:
Alignm length: 246
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 46

Conread position: 1-241
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 0

Conread position: 1-242
Cow position:
Alignm length: 243
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 149, 36

Conread position: 1-242
Cow position:
Alignm length: 242
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-242
Cow position:
Alignm length: 251
Alignm identity: 170
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 158, 42

Conread position: 1-251
Cow position:
Alignm length: 251
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 1-252
Cow position:
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 45

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 177
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 184
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 186
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 185
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 184
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 177
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 230, 53

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-253
Cow position:
Alignm length: 255
Alignm identity: 185
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 167, 53

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 257
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 123

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 179
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position:
Alignm length: 254
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 53

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position:
Alignm length: 254
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 117, 53

Conread position: 1-253
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 183, 53

Conread position: 1-255
Cow position:
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 159, 43

Conread position: 1-255
Cow position:
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-255
Cow position:
Alignm length: 257
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 235, 53

Conread position: 1-255
Cow position:
Alignm length: 255
Alignm identity: 188
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 42

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 190
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 153, 42

Conread position: 1-256
Cow position:
Alignm length: 260
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 45

Conread position: 1-256
Cow position:
Alignm length: 259
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 45

Conread position: 1-256
Cow position:
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position:
Alignm length: 256
Alignm identity: 195
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-256
Cow position:
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 38

Conread position: 1-256
Cow position:
Alignm length: 256
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 189
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 209, 46

Conread position: 1-256
Cow position:
Alignm length: 256
Alignm identity: 188
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 1-257
Cow position:
Alignm length: 258
Alignm identity: 191
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 175, 42

Conread position: 1-257
Cow position:
Alignm length: 257
Alignm identity: 186
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 2-114
Cow position:
Alignm length: 113
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 2-164
Cow position:
Alignm length: 163
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 2-200
Cow position:
Alignm length: 199
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 2-201
Cow position:
Alignm length: 202
Alignm identity: 160
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 155, 41

Conread position: 2-241
Cow position:
Alignm length: 245
Alignm identity: 177
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 131, 52

Conread position: 2-241
Cow position:
Alignm length: 253
Alignm identity: 184
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 154, 41

Conread position: 2-248
Cow position:
Alignm length: 247
Alignm identity: 189
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 43, 0

Conread position: 2-249
Cow position:
Alignm length: 258
Alignm identity: 193
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 75, 14

Conread position: 2-250
Cow position:
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 2-250
Cow position:
Alignm length: 250
Alignm identity: 189
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 188, 21

Conread position: 2-252
Cow position:
Alignm length: 251
Alignm identity: 189
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 73, 52

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 181
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 2-253
Cow position:
Alignm length: 252
Alignm identity: 185
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 0

Conread position: 2-254
Cow position:
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-254
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 15, 0

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 44, 0

Conread position: 2-256
Cow position:
Alignm length: 262
Alignm identity: 194
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 93, 45

Conread position: 2-256
Cow position:
Alignm length: 256
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 232, 52

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-257
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 2-257
Cow position:
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 3-252
Cow position:
Alignm length: 255
Alignm identity: 181
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 72, 51

Conread position: 3-253
Cow position:
Alignm length: 252
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 165, 51

Conread position: 3-253
Cow position:
Alignm length: 251
Alignm identity: 180
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position:
Alignm length: 257
Alignm identity: 190
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 65, 44

Conread position: 3-256
Cow position:
Alignm length: 254
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 3-256
Cow position:
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 3-256
Cow position:
Alignm length: 255
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 44

Conread position: 3-257
Cow position:
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 44

Conread position: 3-257
Cow position:
Alignm length: 256
Alignm identity: 182
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 20, 45

Conread position: 4-251
Cow position:
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 4-254
Cow position:
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 4-256
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 5-184
Cow position:
Alignm length: 180
Alignm identity: 127
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 5-231
Cow position:
Alignm length: 227
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 5-255
Cow position:
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 48

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 42

Conread position: 6-256
Cow position:
Alignm length: 252
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 160, 41

Conread position: 7-240
Cow position:
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 13-256
Cow position:
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 16-256
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 21-253
Cow position:
Alignm length: 234
Alignm identity: 171
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 147, 33

Conread position: 22-235
Cow position:
Alignm length: 226
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 25

Conread position: 22-254
Cow position:
Alignm length: 235
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 107

Conread position: 44-256
Cow position:
Alignm length: 213
Alignm identity: 164
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 37, 0

Conread position: 55-256
Cow position:
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 78-250
Cow position:
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 122, 92

Conread position: 95-256
Cow position:
Alignm length: 163
Alignm identity: 118
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 8, 81

Show alignments to all cow chromosomes.