Cow genome map

Conread name: rcte39_n4.y1

Conread position: 1-148
Cow position: chrX:20741879-20742022 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 1-154
Cow position: chrX:12996884-12996735 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 1-164
Cow position: chrX:40828080-40827926 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 1-184
Cow position: chrX:16854339-16854161 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 1-187
Cow position: chrX:21832912-21833092 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 1-191
Cow position: chrX:32329235-32329420 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 1-199
Cow position: chrX:16803841-16803647 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-200
Cow position: chrX:26755613-26755421 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 1-229
Cow position: chrX:40184099-40184323 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-232
Cow position: chrX:9095669-9095895 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 1-232
Cow position: chrX:24279946-24280173 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-232
Cow position: chrX:43074909-43075136 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-233
Cow position: chrX:6655992-6655782 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 1-235
Cow position: chrX:9642406-9642176 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-235
Cow position: chrX:31728493-31728719 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-241
Cow position: chrX:8482473-8482709 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-241
Cow position: chrX:10866835-10866607 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 166, 53

Conread position: 1-241
Cow position: chrX:21818432-21818218 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 1-241
Cow position: chrX:39556761-39556533 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 153, 45

Conread position: 1-242
Cow position: chrX:1056361-1056123 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 42

Conread position: 1-247
Cow position: chrX:44053842-44054073 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-248
Cow position: chrX:2008672-2008434 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 43, 0

Conread position: 1-248
Cow position: chrX:21662068-21662306 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 245, 53

Conread position: 1-249
Cow position: chrX:23038958-23038716 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 156, 53

Conread position: 1-250
Cow position: chrX:1947915-1947679 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-250
Cow position: chrX:16359981-16359736 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 42, 0

Conread position: 1-250
Cow position: chrX:40225208-40224973 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1-251
Cow position: chrX:21793616-21793863 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 187, 53

Conread position: 1-251
Cow position: chrX:37404203-37403962 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chrX:21254805-21255052 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chrX:21685645-21685892 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chrX:29083093-29083340 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chrX:29099443-29099690 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:322940-323188 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 166, 53

Conread position: 1-253
Cow position: chrX:671967-671719 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:2048138-2048386 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:2479602-2479349 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 140, 45

Conread position: 1-253
Cow position: chrX:2559934-2559686 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:2579445-2579693 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:3418110-3417863 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:4130572-4130313 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 74, 41

Conread position: 1-253
Cow position: chrX:5248416-5248659 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 1-253
Cow position: chrX:7484833-7485081 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:7551775-7551527 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:8640814-8641062 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:9011357-9011601 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:9169579-9169340 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chrX:10438879-10438652 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 1-253
Cow position: chrX:11146307-11146059 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:12145125-12145376 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 159, 53

Conread position: 1-253
Cow position: chrX:12178700-12178953 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 134, 53

Conread position: 1-253
Cow position: chrX:12345922-12346170 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 73, 53

Conread position: 1-253
Cow position: chrX:12359914-12360162 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:13031624-13031378 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:14050167-14049920 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:14125218-14124972 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:14801793-14801546 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:15140505-15140262 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 12, 54

Conread position: 1-253
Cow position: chrX:15977927-15977679 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chrX:16278682-16278926 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:16710982-16711230 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:16808788-16808540 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:18193716-18193964 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:18222441-18222687 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:18656779-18656531 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chrX:18950710-18950462 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:19474122-19473885 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:21226505-21226751 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:21582469-21582717 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:21767826-21768078 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 159, 53

Conread position: 1-253
Cow position: chrX:22564657-22564413 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:22810916-22811164 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chrX:22838298-22838546 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:22887688-22887933 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chrX:23341965-23341717 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:23395633-23395881 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:23572791-23572542 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 152, 53

Conread position: 1-253
Cow position: chrX:23986276-23986524 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:24413053-24413304 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 95, 46

Conread position: 1-253
Cow position: chrX:24468097-24467850 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chrX:24588708-24588462 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:24769830-24769583 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:26275165-26275412 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:26530999-26531247 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:26760542-26760294 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:27318257-27318505 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:28133126-28133370 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 1-253
Cow position: chrX:28503362-28503610 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:28624734-28624487 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:29700917-29700678 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chrX:29849597-29849355 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:29916320-29916072 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:30059913-30060163 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 178, 53

Conread position: 1-253
Cow position: chrX:30164212-30163964 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:30172680-30172433 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:32064142-32063897 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 180, 53

Conread position: 1-253
Cow position: chrX:32145229-32144990 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 1-253
Cow position: chrX:32584904-32584657 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:33685157-33685405 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:34761092-34761340 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:35024095-35024333 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:38228291-38228039 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 42

Conread position: 1-253
Cow position: chrX:38231241-38230993 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 1-253
Cow position: chrX:38961824-38961576 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:39185199-39185447 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:39548425-39548673 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:39560633-39560378 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 206, 46

Conread position: 1-253
Cow position: chrX:39713577-39713825 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:42732898-42733146 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-253
Cow position: chrX:46296688-46296934 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 1-254
Cow position: chrX:16465333-16465576 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 1-254
Cow position: chrX:18488688-18488439 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 1-255
Cow position: chrX:30229087-30228838 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:4481993-4482233 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-256
Cow position: chrX:4767722-4767967 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:10301157-10301405 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 25

Conread position: 1-256
Cow position: chrX:12307736-12307485 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:17889827-17889584 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 1-256
Cow position: chrX:20674894-20675145 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:22308540-22308300 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 1-256
Cow position: chrX:22579361-22579110 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-256
Cow position: chrX:22819104-22819355 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:22869845-22870099 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 167, 53

Conread position: 1-256
Cow position: chrX:29288023-29288270 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-256
Cow position: chrX:30180898-30180650 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:31495763-31496013 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:40070577-40070334 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 165, 45

Conread position: 1-256
Cow position: chrX:41305203-41304954 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 75

Conread position: 1-256
Cow position: chrX:41734157-41733913 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 18

Conread position: 1-256
Cow position: chrX:41847503-41847253 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-256
Cow position: chrX:45374081-45373831 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 166, 35

Conread position: 1-257
Cow position: chrX:16782306-16782558 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-257
Cow position: chrX:28518694-28518442 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 2-103
Cow position: chrX:9535569-9535667 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 2-177
Cow position: chrX:5841341-5841510 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 171, 41

Conread position: 2-188
Cow position: chrX:5375250-5375068 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 2-232
Cow position: chrX:27754455-27754681 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 2-234
Cow position: chrX:41885150-41884924 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 2-239
Cow position: chrX:19877845-19878073 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 109, 44

Conread position: 2-241
Cow position: chrX:24310072-24309841 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-244
Cow position: chrX:44193409-44193175 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 41, 0

Conread position: 2-253
Cow position: chrX:620237-619990 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 176, 45

Conread position: 2-253
Cow position: chrX:3144656-3144902 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 110, 46

Conread position: 2-253
Cow position: chrX:5354275-5354029 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chrX:16702698-16702945 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chrX:20953560-20953807 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 0

Conread position: 2-253
Cow position: chrX:21389605-21389852 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chrX:21414894-21415141 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 2-253
Cow position: chrX:35532882-35533128 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 2-256
Cow position: chrX:2299913-2300158 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-256
Cow position: chrX:2382493-2382744 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 45

Conread position: 2-256
Cow position: chrX:10412948-10412699 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 45

Conread position: 2-256
Cow position: chrX:16325502-16325251 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 41

Conread position: 2-256
Cow position: chrX:21626671-21626418 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 44

Conread position: 2-256
Cow position: chrX:24826035-24826284 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 116, 43

Conread position: 2-256
Cow position: chrX:28557393-28557638 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 105, 52

Conread position: 2-257
Cow position: chrX:24316849-24317100 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 53

Conread position: 3-185
Cow position: chrX:24292635-24292457 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 3-236
Cow position: chrX:20363116-20362884 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 112, 53

Conread position: 3-249
Cow position: chrX:3211508-3211266 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 157, 40

Conread position: 3-253
Cow position: chrX:21343423-21343669 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chrX:23022346-23022587 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 3-253
Cow position: chrX:37134605-37134359 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 51, 0

Conread position: 3-256
Cow position: chrX:12465066-12465309 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 4-253
Cow position: chrX:16046176-16046421 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 4-253
Cow position: chrX:38150717-38150962 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 4-255
Cow position: chrX:9899308-9899068 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 5-235
Cow position: chrX:21063503-21063728 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 5-256
Cow position: chrX:6766704-6766458 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 5-256
Cow position: chrX:11074153-11073922 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 38, 0

Conread position: 5-256
Cow position: chrX:40693702-40693452 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 41

Conread position: 5-257
Cow position: chrX:12310357-12310111 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 36, 0

Conread position: 5-257
Cow position: chrX:22125825-22125577 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 38

Conread position: 7-252
Cow position: chrX:20999236-20999004 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 8-237
Cow position: chrX:23222009-23221785 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 8-256
Cow position: chrX:35938042-35937799 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 9-250
Cow position: chrX:34993213-34993453 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 206, 39

Conread position: 9-256
Cow position: chrX:23415661-23415418 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 10-256
Cow position: chrX:20790505-20790264 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 10-256
Cow position: chrX:38852196-38852437 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 13-241
Cow position: chrX:29766039-29766262 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 197, 26

Conread position: 14-252
Cow position: chrX:26508269-26508498 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 16-256
Cow position: chrX:21592332-21592568 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 25-253
Cow position: chrX:3406291-3406067 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 71, 14

Conread position: 45-256
Cow position: chrX:30985551-30985353 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 31

Conread position: 81-253
Cow position: chrX:45903280-45903451 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 83-253
Cow position: chrX:30688189-30688353 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 89-256
Cow position: chrX:45658967-45658800 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.