Cow genome map
| Conread name: | rcut32_e21.y1 |
| Conread position: | 1-299 |
| Cow position: | chr19:39182285-39181961 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-431 |
| Cow position: | chr19:16316951-16316482 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-460 |
| Cow position: | chr19:25085470-25085959 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 7-460 |
| Cow position: | chr19:27082152-27081648 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 8-285 |
| Cow position: | chr19:1293612-1293915 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 101 |
| Conread position: | 8-461 |
| Cow position: | chr19:4447475-4447979 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 16-288 |
| Cow position: | chr19:36395459-36395754 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 21-459 |
| Cow position: | chr19:3406457-3406945 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 21-471 |
| Cow position: | chr19:34985367-34985855 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 26-288 |
| Cow position: | chr19:43148863-43149149 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 26-291 |
| Cow position: | chr19:1663354-1663638 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 27-285 |
| Cow position: | chr19:5902310-5902592 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 27-288 |
| Cow position: | chr19:24734426-24734705 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 27-288 |
| Cow position: | chr19:31781854-31782138 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 27-435 |
| Cow position: | chr19:29393625-29394083 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 27-459 |
| Cow position: | chr19:10195696-10196173 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 336 |
| Conread position: | 27-459 |
| Cow position: | chr19:55843287-55843759 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 145 |
| Conread position: | 29-288 |
| Cow position: | chr19:2588474-2588750 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 29-299 |
| Cow position: | chr19:17883250-17883518 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 186 |
| Conread position: | 29-383 |
| Cow position: | chr19:30473864-30473459 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 29-460 |
| Cow position: | chr19:14156818-14156379 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 30-285 |
| Cow position: | chr19:38811670-38811919 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 31-147 |
| Cow position: | chr19:35621816-35621934 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-147 |
| Cow position: | chr19:47670198-47670316 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 31-196 |
| Cow position: | chr19:27613215-27613037 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 31-288 |
| Cow position: | chr19:33876704-33876984 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 31-312 |
| Cow position: | chr19:46821142-46821443 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-381 |
| Cow position: | chr19:20403572-20403965 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 31-461 |
| Cow position: | chr19:50561354-50561827 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 208 |
| Conread position: | 31-465 |
| Cow position: | chr19:35381786-35381321 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 377 |
| Conread position: | 34-461 |
| Cow position: | chr19:20672304-20671839 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 315 |
| Conread position: | 35-401 |
| Cow position: | chr19:32952113-32952528 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 314 |
| Conread position: | 35-465 |
| Cow position: | chr19:15720582-15720144 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 261 |
| Conread position: | 36-228 |
| Cow position: | chr19:55378188-55378401 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 36-264 |
| Cow position: | chr19:9118103-9118354 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-288 |
| Cow position: | chr19:19389127-19389402 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-288 |
| Cow position: | chr19:33119431-33119156 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-288 |
| Cow position: | chr19:33528140-33528415 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-288 |
| Cow position: | chr19:46873732-46873456 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 36-289 |
| Cow position: | chr19:405440-405717 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-289 |
| Cow position: | chr19:39394494-39394770 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-299 |
| Cow position: | chr19:776806-777087 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 231 |
| Conread position: | 36-299 |
| Cow position: | chr19:29366821-29367107 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 36-299 |
| Cow position: | chr19:29624329-29624615 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-299 |
| Cow position: | chr19:33944860-33945145 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 36-299 |
| Cow position: | chr19:35781169-35781455 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-299 |
| Cow position: | chr19:40016293-40016013 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 189 |
| Conread position: | 36-389 |
| Cow position: | chr19:4388876-4389269 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 36-393 |
| Cow position: | chr19:7078549-7078955 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-453 |
| Cow position: | chr19:44839876-44839431 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 36-459 |
| Cow position: | chr19:3086086-3086554 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-459 |
| Cow position: | chr19:10613521-10613990 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 416 |
| Conread position: | 36-459 |
| Cow position: | chr19:48626352-48626820 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-459 |
| Cow position: | chr19:55164364-55163892 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-460 |
| Cow position: | chr19:12209640-12209165 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 47, 427 |
| Conread position: | 36-460 |
| Cow position: | chr19:14157707-14158171 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 36-460 |
| Cow position: | chr19:22512538-22513007 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-460 |
| Cow position: | chr19:28596669-28597136 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 382 |
| Conread position: | 36-460 |
| Cow position: | chr19:34906032-34905559 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 36-461 |
| Cow position: | chr19:41204934-41204460 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-492 |
| Cow position: | chr19:30037614-30037109 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 37-288 |
| Cow position: | chr19:19172950-19173225 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 38-299 |
| Cow position: | chr19:42866760-42867044 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 38-424 |
| Cow position: | chr19:20611629-20612064 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 41-461 |
| Cow position: | chr19:12601401-12600937 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 43-460 |
| Cow position: | chr19:41633-42102 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 326 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 43-460 |
| Cow position: | chr19:40849189-40848724 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 399 |
| Conread position: | 72-288 |
| Cow position: | chr19:14528161-14528389 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 83-459 |
| Cow position: | chr19:30515700-30515277 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 125-463 |
| Cow position: | chr19:29628289-29627935 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 127-459 |
| Cow position: | chr19:20928568-20928941 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 194-461 |
| Cow position: | chr19:29365008-29365294 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 275 |
| Conread position: | 195-460 |
| Cow position: | chr19:12551622-12551336 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 209 |
| Conread position: | 195-460 |
| Cow position: | chr19:30518207-30518499 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 195-461 |
| Cow position: | chr19:5680177-5679884 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 209-461 |
| Cow position: | chr19:35363070-35362792 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 246-453 |
| Cow position: | chr19:11425542-11425328 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 270-465 |
| Cow position: | chr19:39877280-39877078 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 280-435 |
| Cow position: | chr19:31762560-31762401 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 280-435 |
| Cow position: | chr19:35781456-35781618 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 280-460 |
| Cow position: | chr19:39976407-39976220 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 280-489 |
| Cow position: | chr19:32617907-32618112 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 96 |
| Conread position: | 288-492 |
| Cow position: | chr19:19173256-19173454 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 289-459 |
| Cow position: | chr19:374109-373932 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 295-459 |
| Cow position: | chr19:41224069-41223898 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.