Cow genome map

Conread name: rcut32_e21.y1

Conread position: 1-299
Cow position: chr26:7459769-7459444 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 3-434
Cow position: chr26:1390177-1390661 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 331
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 11, 0

Conread position: 3-459
Cow position: chr26:3564844-3564338 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 341
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 453

Conread position: 7-459
Cow position: chr26:4440559-4440067 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 336
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 31, 49

Conread position: 7-465
Cow position: chr26:25392991-25393495 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 13

Conread position: 8-459
Cow position: chr26:1346794-1346290 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 342
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 0

Conread position: 8-459
Cow position: chr26:13183511-13184014 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 16

Conread position: 8-460
Cow position: chr26:20019301-20019798 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 25-460
Cow position: chr26:1620876-1621352 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 323
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 27-288
Cow position: chr26:3833256-3833541 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 27-288
Cow position: chr26:4729102-4728818 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 27-372
Cow position: chr26:2201752-2202145 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 27-414
Cow position: chr26:18804148-18803710 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 27-453
Cow position: chr26:12585316-12584840 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 328
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr26:8084048-8084530 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr26:15145716-15146198 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 330
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr26:34265186-34265668 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr26:35560839-35560359 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 336
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 243

Conread position: 27-460
Cow position: chr26:7559394-7558913 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 397

Conread position: 27-461
Cow position: chr26:31138724-31138250 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 418

Conread position: 29-291
Cow position: chr26:9835692-9835981 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 217
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 8, 0

Conread position: 29-310
Cow position: chr26:16781398-16781707 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 29-401
Cow position: chr26:10490468-10490859 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 82

Conread position: 31-291
Cow position: chr26:3700198-3700469 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 54, 226

Conread position: 31-297
Cow position: chr26:26238229-26238515 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 31-459
Cow position: chr26:22691617-22692089 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 328
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 87

Conread position: 31-459
Cow position: chr26:26611683-26612160 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 32-459
Cow position: chr26:10699270-10698810 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 206

Conread position: 33-460
Cow position: chr26:29433462-29433937 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 35-459
Cow position: chr26:1088415-1088881 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 36-239
Cow position: chr26:3199603-3199829 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 36-258
Cow position: chr26:3157347-3157592 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 36-266
Cow position: chr26:3537354-3537607 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 36-282
Cow position: chr26:23889644-23889908 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 47, 233

Conread position: 36-288
Cow position: chr26:8739185-8738910 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 36-288
Cow position: chr26:17182315-17182568 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 47

Conread position: 36-288
Cow position: chr26:28706826-28706556 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 228

Conread position: 36-288
Cow position: chr26:35423731-35424004 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 50, 111

Conread position: 36-296
Cow position: chr26:17288042-17288326 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 36-299
Cow position: chr26:386912-387198 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 36-299
Cow position: chr26:799913-800196 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 36

Conread position: 36-299
Cow position: chr26:23590927-23591213 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 36-391
Cow position: chr26:35191315-35190912 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 19

Conread position: 36-435
Cow position: chr26:18857352-18857794 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-444
Cow position: chr26:11369929-11370379 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 312
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 50, 31

Conread position: 36-453
Cow position: chr26:15199260-15199707 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr26:1343063-1342591 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 36-459
Cow position: chr26:8885076-8885546 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 36-459
Cow position: chr26:9069793-9070266 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 36-459
Cow position: chr26:9115271-9115742 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr26:18928514-18928979 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 323
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 51, 93

Conread position: 36-459
Cow position: chr26:30594397-30593936 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 315
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 342

Conread position: 36-459
Cow position: chr26:35122010-35121539 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 323
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 51, 232

Conread position: 36-460
Cow position: chr26:6429817-6430272 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 192

Conread position: 36-460
Cow position: chr26:13806795-13806324 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 214

Conread position: 36-460
Cow position: chr26:17327394-17327868 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 321
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 415

Conread position: 36-460
Cow position: chr26:17429243-17428761 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 329
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 36-460
Cow position: chr26:26286091-26286564 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-465
Cow position: chr26:24238933-24239405 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 37-460
Cow position: chr26:20255862-20256323 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 40

Conread position: 37-460
Cow position: chr26:27987357-27986901 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 168

Conread position: 38-299
Cow position: chr26:799295-799025 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 26

Conread position: 38-460
Cow position: chr26:9100746-9100287 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 307
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 180

Conread position: 38-493
Cow position: chr26:13773285-13773779 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 340

Conread position: 39-370
Cow position: chr26:11269457-11269828 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 0

Conread position: 43-276
Cow position: chr26:20186561-20186796 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 43-288
Cow position: chr26:17393656-17393392 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 43-448
Cow position: chr26:9694557-9694105 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 313
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 44, 240

Conread position: 43-448
Cow position: chr26:11362430-11362007 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 277
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 155, 40

Conread position: 44-451
Cow position: chr26:12662492-12662053 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 61

Conread position: 61-459
Cow position: chr26:17169087-17169526 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 285
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 62-459
Cow position: chr26:3027181-3026736 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 311
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 0

Conread position: 63-283
Cow position: chr26:6476415-6476175 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 75, 24

Conread position: 83-300
Cow position: chr26:2670536-2670301 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 87-459
Cow position: chr26:7677019-7677438 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 290
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 0

Conread position: 89-459
Cow position: chr26:11297116-11296700 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 38, 192

Conread position: 127-459
Cow position: chr26:11537156-11537529 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 127-460
Cow position: chr26:3097318-3096944 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 130-458
Cow position: chr26:8352075-8352427 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 101

Conread position: 131-448
Cow position: chr26:6098229-6097877 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 30, 332

Conread position: 158-453
Cow position: chr26:7506711-7507033 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 177-444
Cow position: chr26:6837019-6837297 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 110, 14

Conread position: 178-461
Cow position: chr26:23600630-23600329 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 109, 13

Conread position: 194-465
Cow position: chr26:8308339-8308044 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 12

Conread position: 195-459
Cow position: chr26:5430399-5430108 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 195-460
Cow position: chr26:14897501-14897793 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 195-461
Cow position: chr26:2486916-2487209 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 265-460
Cow position: chr26:30569624-30569425 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 30

Conread position: 280-460
Cow position: chr26:19347910-19347721 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 282-461
Cow position: chr26:2902448-2902262 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 291-435
Cow position: chr26:2480826-2480977 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 295-435
Cow position: chr26:22531619-22531472 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr26:16888102-16887931 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr26:30716818-30716989 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-460
Cow position: chr26:33252954-33252782 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr26:4486043-4486216 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr26:19181544-19181371 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr26:19698657-19698484 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 298-461
Cow position: chr26:13706685-13706522 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 299-459
Cow position: chr26:23315584-23315421 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 37, 82

Show alignments to all cow chromosomes.