Cow genome map

Conread name: rcut32_e21.y1

Conread position: 4-270
Cow position: chr27:27045330-27045618 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 7-283
Cow position: chr27:344773-344473 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 7-445
Cow position: chr27:13183113-13182645 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 36

Conread position: 8-285
Cow position: chr27:2001001-2001304 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 8-299
Cow position: chr27:24239958-24239658 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 20, 146

Conread position: 8-299
Cow position: chr27:27729332-27729018 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 189

Conread position: 8-460
Cow position: chr27:2557836-2557334 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 25-460
Cow position: chr27:1081987-1081517 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 409

Conread position: 26-279
Cow position: chr27:14380480-14380756 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 11, 0

Conread position: 26-282
Cow position: chr27:15870833-15870564 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 81

Conread position: 27-276
Cow position: chr27:15374991-15375252 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 10, 125

Conread position: 27-401
Cow position: chr27:15405805-15406220 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 27-459
Cow position: chr27:29036203-29035723 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 87

Conread position: 28-282
Cow position: chr27:4828679-4828951 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 69

Conread position: 29-192
Cow position: chr27:28051605-28051429 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 8, 38

Conread position: 29-291
Cow position: chr27:14669376-14669655 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 40

Conread position: 29-291
Cow position: chr27:21392191-21392475 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 8, 39

Conread position: 29-460
Cow position: chr27:8972623-8973105 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 326
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 8, 471

Conread position: 29-465
Cow position: chr27:25784574-25784099 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 31-273
Cow position: chr27:4811418-4811668 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 83

Conread position: 31-279
Cow position: chr27:8291025-8291294 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 31-288
Cow position: chr27:9970353-9970633 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 31-299
Cow position: chr27:30307087-30306796 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 32-459
Cow position: chr27:8959833-8959358 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 325
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 55, 0

Conread position: 35-460
Cow position: chr27:15872133-15871672 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 324
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 48, 19

Conread position: 36-243
Cow position: chr27:13308831-13309061 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 36-284
Cow position: chr27:12277297-12277561 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 49, 223

Conread position: 36-288
Cow position: chr27:1536357-1536631 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 69, 199

Conread position: 36-288
Cow position: chr27:9332865-9333129 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 50, 12

Conread position: 36-288
Cow position: chr27:15634155-15633881 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 36-288
Cow position: chr27:22647445-22647170 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 36-299
Cow position: chr27:2331690-2331976 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 36-299
Cow position: chr27:5914120-5914401 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 210

Conread position: 36-299
Cow position: chr27:5925460-5925735 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 127

Conread position: 36-299
Cow position: chr27:6524091-6523807 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 30

Conread position: 36-299
Cow position: chr27:8427044-8427323 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 36-299
Cow position: chr27:11481118-11481404 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 36-299
Cow position: chr27:27291576-27291866 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 236

Conread position: 36-299
Cow position: chr27:27930395-27930669 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 49, 70

Conread position: 36-383
Cow position: chr27:8592568-8592956 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 50, 221

Conread position: 36-435
Cow position: chr27:4982559-4982995 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 314

Conread position: 36-444
Cow position: chr27:15867108-15866657 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 42, 62

Conread position: 36-459
Cow position: chr27:1520867-1521338 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 47, 135

Conread position: 36-459
Cow position: chr27:16031210-16030739 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 441

Conread position: 36-459
Cow position: chr27:22797470-22797000 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 36-459
Cow position: chr27:24296082-24295601 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 36-460
Cow position: chr27:165732-165261 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 222

Conread position: 36-460
Cow position: chr27:3232347-3231878 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-460
Cow position: chr27:3653513-3653040 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-460
Cow position: chr27:13353493-13353965 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 36-460
Cow position: chr27:15033704-15033232 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 36-460
Cow position: chr27:19424190-19423716 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 328
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 36-460
Cow position: chr27:20810608-20811076 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 317
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 50, 0

Conread position: 36-460
Cow position: chr27:24054896-24055343 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 7

Conread position: 36-460
Cow position: chr27:25801018-25800551 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 36-460
Cow position: chr27:29811514-29811961 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 309
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 50, 78

Conread position: 36-461
Cow position: chr27:12006335-12006809 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 37-288
Cow position: chr27:25112351-25112618 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 9

Conread position: 37-299
Cow position: chr27:15272880-15272601 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 37-460
Cow position: chr27:14297395-14297865 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 362

Conread position: 37-460
Cow position: chr27:19523520-19523050 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 63

Conread position: 43-459
Cow position: chr27:10579141-10579602 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 321
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 228

Conread position: 43-460
Cow position: chr27:11434369-11434822 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 0

Conread position: 46-299
Cow position: chr27:5983833-5983557 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 48-198
Cow position: chr27:26645056-26644899 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 61-465
Cow position: chr27:1501726-1502158 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 75-460
Cow position: chr27:17476979-17476563 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 337

Conread position: 76-459
Cow position: chr27:3649710-3650140 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 42, 0

Conread position: 83-461
Cow position: chr27:19388956-19388529 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 42, 25

Conread position: 130-459
Cow position: chr27:19300277-19299907 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 131-460
Cow position: chr27:28984059-28984426 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 28, 106

Conread position: 178-460
Cow position: chr27:11256332-11256027 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 96, 30

Conread position: 194-465
Cow position: chr27:13409362-13409661 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 12, 283

Conread position: 195-458
Cow position: chr27:8202632-8202342 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 195-459
Cow position: chr27:8187204-8187491 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 195-459
Cow position: chr27:20001448-20001157 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 195-460
Cow position: chr27:12750904-12751189 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 9, 203

Conread position: 195-460
Cow position: chr27:13422796-13422504 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 209-459
Cow position: chr27:19487602-19487325 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 280-459
Cow position: chr27:13198598-13198412 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 163

Conread position: 280-460
Cow position: chr27:5853217-5853406 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 124

Conread position: 280-461
Cow position: chr27:12190747-12190935 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 295-459
Cow position: chr27:11095321-11095150 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr27:15178896-15178725 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr27:15312881-15312710 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr27:29374418-29374247 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr27:29446617-29446446 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 295-460
Cow position: chr27:8427346-8427518 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:523508-523682 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:724032-724205 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:1481381-1481554 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:11651584-11651757 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:12147380-12147553 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr27:23893822-23893995 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 298-459
Cow position: chr27:3340435-3340267 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 298-460
Cow position: chr27:16787509-16787346 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 79

Conread position: 301-466
Cow position: chr27:14669698-14669868 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.