Cow genome map

Conread name: rcut32_e21.y1

Conread position: 3-276
Cow position: chr9:382832-382540 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 7

Conread position: 3-296
Cow position: chr9:59508123-59507843 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 27, 7

Conread position: 7-282
Cow position: chr9:54995694-54995990 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 7-288
Cow position: chr9:4673116-4673421 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 7-401
Cow position: chr9:53776753-53777175 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 276
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 282

Conread position: 8-182
Cow position: chr9:44920296-44920484 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 8-299
Cow position: chr9:22570164-22570481 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 6, 90

Conread position: 8-435
Cow position: chr9:13492816-13493268 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 71

Conread position: 10-147
Cow position: chr9:9415019-9415160 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 15-293
Cow position: chr9:55797036-55796735 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 55

Conread position: 25-149
Cow position: chr9:17870574-17870702 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 25-299
Cow position: chr9:9515751-9516041 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 59, 236

Conread position: 25-460
Cow position: chr9:13180999-13181473 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 322
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 96, 79

Conread position: 26-293
Cow position: chr9:10672254-10671968 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 16

Conread position: 26-299
Cow position: chr9:10678848-10678553 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 84

Conread position: 26-444
Cow position: chr9:24873869-24873439 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 259

Conread position: 26-459
Cow position: chr9:873736-874216 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 329
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 11, 0

Conread position: 26-460
Cow position: chr9:3997680-3997209 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 103

Conread position: 27-288
Cow position: chr9:41312960-41312675 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 27-299
Cow position: chr9:54996954-54997250 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 27-391
Cow position: chr9:8282187-8281779 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr9:1062614-1062133 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 0

Conread position: 27-459
Cow position: chr9:7104150-7103668 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 329
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr9:17017835-17018317 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 332
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr9:35624395-35624877 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 27-459
Cow position: chr9:60409483-60409965 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 27-460
Cow position: chr9:1838036-1838515 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 27-460
Cow position: chr9:28681281-28681764 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 0

Conread position: 28-306
Cow position: chr9:9357253-9357526 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 69

Conread position: 29-196
Cow position: chr9:12161678-12161854 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 81

Conread position: 29-291
Cow position: chr9:28774184-28773901 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 0

Conread position: 29-299
Cow position: chr9:23421669-23421961 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 29-453
Cow position: chr9:51692537-51692071 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 376

Conread position: 29-460
Cow position: chr9:24996457-24996915 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 118

Conread position: 29-461
Cow position: chr9:1938950-1938479 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 29-461
Cow position: chr9:18071566-18072045 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 29-461
Cow position: chr9:23005482-23005032 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 43

Conread position: 29-461
Cow position: chr9:26087919-26087446 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 82

Conread position: 29-465
Cow position: chr9:34688568-34689013 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 110

Conread position: 30-282
Cow position: chr9:5525255-5525004 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 121, 74

Conread position: 30-296
Cow position: chr9:9623022-9623309 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 12, 0

Conread position: 31-196
Cow position: chr9:43856452-43856275 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 31-285
Cow position: chr9:28024905-28025183 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 31-288
Cow position: chr9:3756744-3756473 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 31-288
Cow position: chr9:34567734-34568009 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 41

Conread position: 31-299
Cow position: chr9:7005827-7006117 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 55, 209

Conread position: 31-299
Cow position: chr9:46525120-46524841 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 85

Conread position: 31-383
Cow position: chr9:3545913-3546267 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 243
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 278

Conread position: 31-459
Cow position: chr9:39303467-39302990 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 31-459
Cow position: chr9:49259420-49258945 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 329
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 56, 24

Conread position: 34-461
Cow position: chr9:28785435-28785907 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 320
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 49, 6

Conread position: 35-299
Cow position: chr9:17302888-17302603 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 35-302
Cow position: chr9:23028939-23028650 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 21

Conread position: 35-435
Cow position: chr9:2527377-2527815 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 35-459
Cow position: chr9:40316226-40316687 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 343

Conread position: 35-460
Cow position: chr9:1099685-1100148 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 327
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 50, 8

Conread position: 36-147
Cow position: chr9:5840057-5839944 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 36-270
Cow position: chr9:38679209-38679447 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 76, 163

Conread position: 36-271
Cow position: chr9:9491851-9491607 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 36-276
Cow position: chr9:44168680-44168945 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 36-284
Cow position: chr9:51178578-51178306 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 28

Conread position: 36-285
Cow position: chr9:7830812-7830543 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 158

Conread position: 36-288
Cow position: chr9:1071193-1070918 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 36-288
Cow position: chr9:6252659-6252930 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 64

Conread position: 36-288
Cow position: chr9:9210234-9210509 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 36-288
Cow position: chr9:13187295-13187570 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 36-288
Cow position: chr9:13312654-13312923 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 135

Conread position: 36-288
Cow position: chr9:22655902-22656164 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 77

Conread position: 36-288
Cow position: chr9:27781821-27781546 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 36-288
Cow position: chr9:31810668-31810943 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 36-288
Cow position: chr9:32972458-32972732 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 36-288
Cow position: chr9:34238668-34238393 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 36-288
Cow position: chr9:37174314-37174039 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 36-288
Cow position: chr9:44202989-44202714 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 36-288
Cow position: chr9:45791939-45792214 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 36-288
Cow position: chr9:47171144-47171419 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 36-288
Cow position: chr9:50326788-50327062 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 10

Conread position: 36-288
Cow position: chr9:52526242-52526517 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 36-288
Cow position: chr9:55031596-55031870 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 36-290
Cow position: chr9:5007064-5007333 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 36-291
Cow position: chr9:62401226-62400954 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 108, 35

Conread position: 36-296
Cow position: chr9:22803561-22803277 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 36-299
Cow position: chr9:1307261-1306974 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 36-299
Cow position: chr9:4940408-4940123 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 246

Conread position: 36-299
Cow position: chr9:19156201-19155915 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 49, 70

Conread position: 36-299
Cow position: chr9:19545602-19545887 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 58

Conread position: 36-299
Cow position: chr9:24918197-24917911 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 36-299
Cow position: chr9:42570305-42570592 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 36-299
Cow position: chr9:54459411-54459125 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 36-300
Cow position: chr9:18109793-18110077 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 50, 86

Conread position: 36-383
Cow position: chr9:4127851-4127482 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 89

Conread position: 36-397
Cow position: chr9:5058991-5058592 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 261
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 36-411
Cow position: chr9:46667707-46667283 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 36-429
Cow position: chr9:13472472-13472052 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 36-431
Cow position: chr9:18830829-18831267 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 131

Conread position: 36-452
Cow position: chr9:56862074-56861625 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 299
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 211

Conread position: 36-457
Cow position: chr9:47005833-47006294 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 318
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 72

Conread position: 36-458
Cow position: chr9:16178678-16179146 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 62

Conread position: 36-458
Cow position: chr9:35565448-35564977 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 36-459
Cow position: chr9:174682-174212 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 323
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 216

Conread position: 36-459
Cow position: chr9:777722-777248 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 323
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 36-459
Cow position: chr9:3052356-3052827 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 313

Conread position: 36-459
Cow position: chr9:5430557-5431029 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 322
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:18710584-18711055 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:26325837-26326308 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:30401373-30401837 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 36-459
Cow position: chr9:30675166-30675637 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 36-459
Cow position: chr9:31417425-31416953 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:34690439-34689971 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 232

Conread position: 36-459
Cow position: chr9:36829961-36829489 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:50840523-50841009 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 330
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 36-459
Cow position: chr9:59496092-59495621 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 363

Conread position: 36-459
Cow position: chr9:64012138-64011667 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 319
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 36-460
Cow position: chr9:2856935-2857407 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 70

Conread position: 36-460
Cow position: chr9:3061678-3062151 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 36-460
Cow position: chr9:15052798-15052335 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 248

Conread position: 36-460
Cow position: chr9:17061266-17060794 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 318
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 36-460
Cow position: chr9:21412403-21412865 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 22

Conread position: 36-460
Cow position: chr9:33843414-33843887 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-460
Cow position: chr9:40143260-40142796 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 149

Conread position: 36-460
Cow position: chr9:45876609-45877082 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 0

Conread position: 36-460
Cow position: chr9:46627402-46627874 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 325
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 393

Conread position: 36-460
Cow position: chr9:58747727-58747259 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 317
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 97, 377

Conread position: 36-461
Cow position: chr9:772155-771684 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 326
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 18

Conread position: 36-461
Cow position: chr9:3411803-3411335 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 36-461
Cow position: chr9:3806687-3807157 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 330
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 24

Conread position: 36-461
Cow position: chr9:5452549-5452075 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-461
Cow position: chr9:9958093-9957627 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 36-461
Cow position: chr9:37253495-37253969 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-461
Cow position: chr9:43494139-43494613 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-461
Cow position: chr9:43496225-43496699 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-461
Cow position: chr9:51010652-51011078 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 129

Conread position: 36-461
Cow position: chr9:62818130-62817656 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 36-465
Cow position: chr9:1519682-1520150 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 221

Conread position: 36-474
Cow position: chr9:63563505-63563997 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 313
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 47, 385

Conread position: 37-147
Cow position: chr9:17007867-17007755 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 38-448
Cow position: chr9:29337999-29338451 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 381

Conread position: 41-461
Cow position: chr9:46670027-46670485 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 46-296
Cow position: chr9:25974882-25974615 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 64

Conread position: 46-461
Cow position: chr9:34917720-34918170 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 37, 208

Conread position: 49-288
Cow position: chr9:37907951-37908213 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 49-288
Cow position: chr9:47883182-47882923 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 11, 125

Conread position: 51-459
Cow position: chr9:18243877-18243420 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 53-461
Cow position: chr9:61739939-61739490 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 34

Conread position: 56-299
Cow position: chr9:21841453-21841207 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 167

Conread position: 68-451
Cow position: chr9:58674785-58674354 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 302
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 0

Conread position: 68-458
Cow position: chr9:43302478-43302042 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 18, 180

Conread position: 83-435
Cow position: chr9:33999377-33999771 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 24

Conread position: 85-293
Cow position: chr9:18007739-18007967 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 86-460
Cow position: chr9:4552940-4553358 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 41, 198

Conread position: 88-460
Cow position: chr9:30476810-30477205 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 104

Conread position: 100-461
Cow position: chr9:20900131-20900532 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 49, 137

Conread position: 125-413
Cow position: chr9:50728031-50727720 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 127-459
Cow position: chr9:10802863-10803235 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 254
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 110

Conread position: 127-459
Cow position: chr9:16639464-16639837 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 127-461
Cow position: chr9:9611697-9611322 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 130-383
Cow position: chr9:62074924-62075209 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 137-460
Cow position: chr9:59454697-59454335 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 353

Conread position: 178-465
Cow position: chr9:3730284-3730586 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 16

Conread position: 181-465
Cow position: chr9:12195198-12194889 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 11

Conread position: 182-460
Cow position: chr9:17296844-17296542 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 7, 0

Conread position: 187-461
Cow position: chr9:44920526-44920830 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 192-435
Cow position: chr9:44107341-44107597 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 18, 73

Conread position: 192-460
Cow position: chr9:27898298-27898590 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 218

Conread position: 194-460
Cow position: chr9:29184262-29184554 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 29

Conread position: 195-447
Cow position: chr9:2618513-2618234 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 195-459
Cow position: chr9:9094042-9093751 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 195-459
Cow position: chr9:31361901-31361610 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 196-459
Cow position: chr9:50002801-50002511 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 209-401
Cow position: chr9:13141732-13141533 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 127, 0

Conread position: 209-459
Cow position: chr9:15670138-15670414 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 209-460
Cow position: chr9:9260988-9260711 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 56, 0

Conread position: 261-459
Cow position: chr9:32305787-32305986 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 75, 15

Conread position: 262-459
Cow position: chr9:11312730-11312932 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 33

Conread position: 264-465
Cow position: chr9:9405241-9405449 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 9

Conread position: 280-460
Cow position: chr9:26992407-26992598 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 280-461
Cow position: chr9:1570406-1570222 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 280-461
Cow position: chr9:21459391-21459579 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 280-465
Cow position: chr9:213781-213973 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 286-460
Cow position: chr9:15805160-15805342 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 286-460
Cow position: chr9:37100614-37100793 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 286-463
Cow position: chr9:61667345-61667525 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 103

Conread position: 292-459
Cow position: chr9:36025716-36025542 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 294-460
Cow position: chr9:22754596-22754433 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 295-459
Cow position: chr9:10643546-10643375 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr9:22243280-22243109 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-459
Cow position: chr9:46682785-46682956 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 295-461
Cow position: chr9:19222286-19222459 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr9:37251404-37251577 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 295-461
Cow position: chr9:56531020-56530847 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 295-465
Cow position: chr9:20901382-20901558 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 162

Conread position: 298-428
Cow position: chr9:34696542-34696676 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.