Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-205 |
| Cow position: | chr10:17433879-17434076 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 1-210 |
| Cow position: | chr10:14863309-14863508 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-261 |
| Cow position: | chr10:32702257-32702525 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 4-191 |
| Cow position: | chr10:53320890-53320705 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 4-222 |
| Cow position: | chr10:1665060-1664845 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 4-261 |
| Cow position: | chr10:57988491-57988227 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 7-198 |
| Cow position: | chr10:20382519-20382330 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-242 |
| Cow position: | chr10:21739244-21739008 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 7-243 |
| Cow position: | chr10:10172246-10172484 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr10:25651918-25651680 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr10:33870796-33871034 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr10:57555824-57555586 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-252 |
| Cow position: | chr10:38544379-38544136 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 7-252 |
| Cow position: | chr10:55094777-55095022 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 7-255 |
| Cow position: | chr10:41158924-41159174 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr10:41878435-41878685 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr10:29109475-29109218 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 8-205 |
| Cow position: | chr10:47908448-47908648 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 8-212 |
| Cow position: | chr10:58812249-58812044 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 8-261 |
| Cow position: | chr10:7280595-7280336 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 10-205 |
| Cow position: | chr10:39181311-39181508 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 10-243 |
| Cow position: | chr10:16927180-16927418 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 10-255 |
| Cow position: | chr10:44708099-44707856 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 11-211 |
| Cow position: | chr10:21517464-21517274 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 11-243 |
| Cow position: | chr10:7896966-7896732 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 11-255 |
| Cow position: | chr10:21488470-21488717 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 11-261 |
| Cow position: | chr10:23409727-23409482 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 11-261 |
| Cow position: | chr10:39439668-39439921 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 206 |
| Conread position: | 12-252 |
| Cow position: | chr10:41568617-41568859 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 12-258 |
| Cow position: | chr10:68160125-68159873 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 205 |
| Conread position: | 12-261 |
| Cow position: | chr10:8291559-8291812 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 12-261 |
| Cow position: | chr10:37771397-37771653 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 14-238 |
| Cow position: | chr10:47788191-47788418 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 200 |
| Conread position: | 14-259 |
| Cow position: | chr10:31525252-31525495 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 182 |
| Conread position: | 15-261 |
| Cow position: | chr10:1379012-1379265 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 16-239 |
| Cow position: | chr10:41634916-41635133 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 16-261 |
| Cow position: | chr10:2119493-2119242 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-261 |
| Cow position: | chr10:29845139-29844890 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-262 |
| Cow position: | chr10:62407265-62407012 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 19-252 |
| Cow position: | chr10:22908949-22908710 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 19-260 |
| Cow position: | chr10:20369585-20369342 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 19-261 |
| Cow position: | chr10:39778608-39778363 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 20-257 |
| Cow position: | chr10:38849791-38850031 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 20-261 |
| Cow position: | chr10:22102754-22103002 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 21-252 |
| Cow position: | chr10:41387464-41387227 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 21-261 |
| Cow position: | chr10:38343842-38343597 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 21-261 |
| Cow position: | chr10:39039786-39039547 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 36-255 |
| Cow position: | chr10:19143080-19142856 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 36-259 |
| Cow position: | chr10:41151198-41150968 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 160 |
| Conread position: | 37-255 |
| Cow position: | chr10:54930678-54930454 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 179 |
| Conread position: | 43-243 |
| Cow position: | chr10:39814848-39814650 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 43-258 |
| Cow position: | chr10:40150635-40150432 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 61-255 |
| Cow position: | chr10:6556101-6556294 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 61-255 |
| Cow position: | chr10:29732308-29732500 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 72-243 |
| Cow position: | chr10:28255830-28255659 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 72-257 |
| Cow position: | chr10:16478320-16478505 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 79-259 |
| Cow position: | chr10:32828458-32828639 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 164, 131 |
| Conread position: | 93-287 |
| Cow position: | chr10:20374966-20374770 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 138-259 |
| Cow position: | chr10:48375970-48375848 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 107, 69 |
Show alignments to all cow chromosomes.