Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-252 |
| Cow position: | chr11:29667450-29667202 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 3-238 |
| Cow position: | chr11:4055184-4054946 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 3-261 |
| Cow position: | chr11:27668845-27668586 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 4-239 |
| Cow position: | chr11:10056646-10056884 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 24, 210 |
| Conread position: | 4-259 |
| Cow position: | chr11:1489029-1488765 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 214 |
| Conread position: | 7-239 |
| Cow position: | chr11:25393344-25393568 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 7-242 |
| Cow position: | chr11:52420553-52420779 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 7-243 |
| Cow position: | chr11:3494140-3494378 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-243 |
| Cow position: | chr11:44517713-44517477 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-243 |
| Cow position: | chr11:50836517-50836279 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-252 |
| Cow position: | chr11:20733087-20732838 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 7-252 |
| Cow position: | chr11:23249319-23249073 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 7-252 |
| Cow position: | chr11:30122694-30122455 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 7-255 |
| Cow position: | chr11:31927306-31927556 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 7-255 |
| Cow position: | chr11:41234165-41234415 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr11:53286018-53285772 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 7-255 |
| Cow position: | chr11:67451643-67451893 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-258 |
| Cow position: | chr11:67154831-67155083 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 7-259 |
| Cow position: | chr11:15986402-15986649 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr11:17106531-17106275 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-259 |
| Cow position: | chr11:17119193-17118936 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-259 |
| Cow position: | chr11:19062926-19062670 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr11:49553005-49552745 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 215 |
| Conread position: | 7-261 |
| Cow position: | chr11:50949177-50948917 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 161 |
| Conread position: | 7-264 |
| Cow position: | chr11:30253380-30253635 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 8-242 |
| Cow position: | chr11:32452983-32453219 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 9-243 |
| Cow position: | chr11:67845419-67845183 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 9-243 |
| Cow position: | chr11:86876731-86876495 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 9-252 |
| Cow position: | chr11:24394470-24394710 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 9-252 |
| Cow position: | chr11:26069889-26069644 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 9-252 |
| Cow position: | chr11:31863241-31863482 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 9-255 |
| Cow position: | chr11:71330747-71331000 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 214 |
| Conread position: | 9-261 |
| Cow position: | chr11:19101341-19101087 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-261 |
| Cow position: | chr11:43513469-43513220 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 58 |
| Conread position: | 9-261 |
| Cow position: | chr11:72309886-72309631 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 10-243 |
| Cow position: | chr11:57626897-57626663 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 12, 174 |
| Conread position: | 10-255 |
| Cow position: | chr11:9155995-9155756 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 10-255 |
| Cow position: | chr11:28228616-28228367 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 10-255 |
| Cow position: | chr11:73134458-73134703 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 10-261 |
| Cow position: | chr11:11590118-11590375 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 10-264 |
| Cow position: | chr11:26548680-26548940 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 11-181 |
| Cow position: | chr11:26123775-26123599 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-252 |
| Cow position: | chr11:41169544-41169299 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr11:10848604-10848859 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr11:38834296-38834039 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr11:53430879-53430626 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr11:85392682-85392425 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-255 |
| Cow position: | chr11:21475273-21475521 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 13-252 |
| Cow position: | chr11:47759125-47758880 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 15, 190 |
| Conread position: | 19-243 |
| Cow position: | chr11:17547317-17547546 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 19-252 |
| Cow position: | chr11:66730240-66730480 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 21-259 |
| Cow position: | chr11:7117579-7117818 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 26-261 |
| Cow position: | chr11:35894730-35894497 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 215, 16 |
| Conread position: | 36-173 |
| Cow position: | chr11:9215333-9215189 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 36-217 |
| Cow position: | chr11:12372661-12372474 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 24, 180 |
| Conread position: | 36-259 |
| Cow position: | chr11:17281305-17281072 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 183 |
| Conread position: | 36-261 |
| Cow position: | chr11:4062727-4062503 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 41-252 |
| Cow position: | chr11:3856389-3856599 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 41-259 |
| Cow position: | chr11:87142762-87142988 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 176 |
| Conread position: | 41-261 |
| Cow position: | chr11:12357214-12356993 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 42-261 |
| Cow position: | chr11:39804911-39805143 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 43-252 |
| Cow position: | chr11:29231790-29231583 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 43-264 |
| Cow position: | chr11:34018197-34018414 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 50-204 |
| Cow position: | chr11:40329788-40329633 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 51-243 |
| Cow position: | chr11:61399908-61399716 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 57, 159 |
| Conread position: | 51-255 |
| Cow position: | chr11:4268984-4268777 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 168 |
| Conread position: | 58-216 |
| Cow position: | chr11:33976871-33976715 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 88-264 |
| Cow position: | chr11:44155766-44155589 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 93-224 |
| Cow position: | chr11:49558074-49557943 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 116-259 |
| Cow position: | chr11:40405790-40405646 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 99 |
| Conread position: | 137-259 |
| Cow position: | chr11:21470097-21470220 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 73 |
Show alignments to all cow chromosomes.