Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-252 |
| Cow position: | chr12:21253149-21252902 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 2-223 |
| Cow position: | chr12:25262079-25261859 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 2-240 |
| Cow position: | chr12:21943174-21943415 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 3-261 |
| Cow position: | chr12:8676660-8676394 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 4-256 |
| Cow position: | chr12:1888129-1887870 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 31, 213 |
| Conread position: | 6-252 |
| Cow position: | chr12:1776523-1776280 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 7-242 |
| Cow position: | chr12:22568315-22568080 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-252 |
| Cow position: | chr12:20996648-20996402 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-252 |
| Cow position: | chr12:48471446-48471202 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 7-255 |
| Cow position: | chr12:14660912-14660662 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 7-255 |
| Cow position: | chr12:24994525-24994275 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr12:32654994-32655238 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 7-258 |
| Cow position: | chr12:42606810-42606558 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 7-261 |
| Cow position: | chr12:27931471-27931214 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 10-255 |
| Cow position: | chr12:37560455-37560701 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-261 |
| Cow position: | chr12:21210106-21210359 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 201 |
| Conread position: | 11-255 |
| Cow position: | chr12:11099665-11099922 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr12:1403946-1404193 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 172, 49 |
| Conread position: | 11-261 |
| Cow position: | chr12:6405197-6404943 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 11-261 |
| Cow position: | chr12:42858097-42857838 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-243 |
| Cow position: | chr12:3362380-3362610 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 12-264 |
| Cow position: | chr12:30685183-30685432 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 13-261 |
| Cow position: | chr12:27854524-27854269 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 14-261 |
| Cow position: | chr12:22204270-22204016 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 16-255 |
| Cow position: | chr12:21482554-21482789 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 20-259 |
| Cow position: | chr12:35345980-35346224 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 23-192 |
| Cow position: | chr12:34174568-34174742 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 34-252 |
| Cow position: | chr12:43913299-43913523 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 23, 147 |
| Conread position: | 36-166 |
| Cow position: | chr12:20844058-20844191 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 36-233 |
| Cow position: | chr12:17967274-17967480 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 36-233 |
| Cow position: | chr12:21092256-21092062 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 36-252 |
| Cow position: | chr12:24433622-24433399 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 181 |
| Conread position: | 36-252 |
| Cow position: | chr12:34174805-34175028 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 181 |
| Conread position: | 36-261 |
| Cow position: | chr12:20461767-20461534 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 26, 181 |
| Conread position: | 41-242 |
| Cow position: | chr12:23140701-23140499 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 67, 170 |
| Conread position: | 42-259 |
| Cow position: | chr12:19870364-19870577 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 42-261 |
| Cow position: | chr12:25099000-25098779 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 67-261 |
| Cow position: | chr12:15950307-15950111 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 43, 144 |
| Conread position: | 70-255 |
| Cow position: | chr12:33042863-33043049 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 140 |
| Conread position: | 87-243 |
| Cow position: | chr12:22519460-22519304 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 96-288 |
| Cow position: | chr12:11581530-11581724 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 115 |
Show alignments to all cow chromosomes.