Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-255 |
| Cow position: | chr13:11797499-11797239 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 215 |
| Conread position: | 3-252 |
| Cow position: | chr13:47575303-47575557 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 4-204 |
| Cow position: | chr13:25692883-25693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-252 |
| Cow position: | chr13:13326139-13326389 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 4-259 |
| Cow position: | chr13:48358840-48359100 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 7-243 |
| Cow position: | chr13:6358342-6358580 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr13:11388216-11388453 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-243 |
| Cow position: | chr13:17309682-17309919 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr13:21838980-21838751 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 7-243 |
| Cow position: | chr13:60468644-60468883 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-252 |
| Cow position: | chr13:31508128-31508372 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 7-255 |
| Cow position: | chr13:5500780-5500531 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 15, 185 |
| Conread position: | 7-255 |
| Cow position: | chr13:21697482-21697732 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr13:31732675-31732428 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 7-255 |
| Cow position: | chr13:33524738-33524488 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-257 |
| Cow position: | chr13:16253298-16253041 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 7-261 |
| Cow position: | chr13:32984126-32983869 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-261 |
| Cow position: | chr13:35758503-35758756 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-271 |
| Cow position: | chr13:49974884-49975149 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-280 |
| Cow position: | chr13:20541038-20540759 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 8-252 |
| Cow position: | chr13:43590541-43590779 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 8-261 |
| Cow position: | chr13:6666921-6666663 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 9-179 |
| Cow position: | chr13:28860384-28860557 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 9-255 |
| Cow position: | chr13:31729673-31729435 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 9-255 |
| Cow position: | chr13:34324356-34324110 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 10-243 |
| Cow position: | chr13:678973-679204 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 194 |
| Conread position: | 10-243 |
| Cow position: | chr13:50193173-50192942 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 10-252 |
| Cow position: | chr13:50110675-50110920 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-255 |
| Cow position: | chr13:60648583-60648338 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 11-213 |
| Cow position: | chr13:4485011-4485216 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-252 |
| Cow position: | chr13:34938660-34938902 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 11-259 |
| Cow position: | chr13:11793866-11793604 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 11-259 |
| Cow position: | chr13:42090471-42090219 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 11-261 |
| Cow position: | chr13:4942604-4942861 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 11-261 |
| Cow position: | chr13:31611089-31610841 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 11-261 |
| Cow position: | chr13:34041115-34040859 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-243 |
| Cow position: | chr13:42217463-42217226 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 12-261 |
| Cow position: | chr13:13901087-13901342 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 12-261 |
| Cow position: | chr13:30304419-30304673 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 12-261 |
| Cow position: | chr13:34343125-34343382 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 12-264 |
| Cow position: | chr13:14186222-14186479 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 14-252 |
| Cow position: | chr13:43981863-43981621 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 16-240 |
| Cow position: | chr13:3482599-3482379 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 16-261 |
| Cow position: | chr13:9045980-9046224 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 16-261 |
| Cow position: | chr13:33335091-33334844 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 20-261 |
| Cow position: | chr13:14401880-14401632 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 20-261 |
| Cow position: | chr13:32923908-32923658 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 21-228 |
| Cow position: | chr13:31690923-31690719 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 34-181 |
| Cow position: | chr13:34764596-34764446 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 36-261 |
| Cow position: | chr13:60423998-60424224 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 176 |
| Conread position: | 37-261 |
| Cow position: | chr13:30654180-30653950 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 178 |
| Conread position: | 41-170 |
| Cow position: | chr13:34908788-34908655 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 41-259 |
| Cow position: | chr13:15449899-15449675 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 50-261 |
| Cow position: | chr13:32735931-32735716 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 168 |
| Conread position: | 51-261 |
| Cow position: | chr13:9298710-9298922 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 63-255 |
| Cow position: | chr13:34869248-34869440 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 92-259 |
| Cow position: | chr13:36348831-36348662 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 97-251 |
| Cow position: | chr13:5624436-5624283 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 111-252 |
| Cow position: | chr13:32547830-32547970 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 144-259 |
| Cow position: | chr13:53553167-53553054 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.