Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-259 |
| Cow position: | chr14:29223995-29223736 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 1-261 |
| Cow position: | chr14:25693028-25693297 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 2-255 |
| Cow position: | chr14:45027916-45027659 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 3-209 |
| Cow position: | chr14:45188714-45188511 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 39 |
| Conread position: | 4-252 |
| Cow position: | chr14:18417592-18417844 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 7-171 |
| Cow position: | chr14:13274695-13274866 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 7-205 |
| Cow position: | chr14:10147968-10148169 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr14:45670942-45670704 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-252 |
| Cow position: | chr14:29046580-29046333 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 35, 204 |
| Conread position: | 7-252 |
| Cow position: | chr14:48601250-48601009 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 238, 24 |
| Conread position: | 7-255 |
| Cow position: | chr14:12124089-12123839 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 7-255 |
| Cow position: | chr14:30595260-30595011 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 7-259 |
| Cow position: | chr14:33678157-33678411 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 161 |
| Conread position: | 7-261 |
| Cow position: | chr14:44290159-44290415 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 7-261 |
| Cow position: | chr14:45710635-45710388 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 7-295 |
| Cow position: | chr14:45207378-45207665 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 9-241 |
| Cow position: | chr14:9046676-9046909 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 9-246 |
| Cow position: | chr14:17759796-17759562 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 9-252 |
| Cow position: | chr14:191142-191384 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 100, 207 |
| Conread position: | 9-259 |
| Cow position: | chr14:19327168-19326913 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-259 |
| Cow position: | chr14:23256265-23256012 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 9-259 |
| Cow position: | chr14:44552933-44553184 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-261 |
| Cow position: | chr14:16918623-16918370 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 9-261 |
| Cow position: | chr14:17687591-17687847 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 10-242 |
| Cow position: | chr14:16808225-16807992 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 10-243 |
| Cow position: | chr14:1659553-1659786 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 10-255 |
| Cow position: | chr14:16342800-16342558 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 10-255 |
| Cow position: | chr14:17490241-17489997 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 10-255 |
| Cow position: | chr14:43559330-43559581 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 10-259 |
| Cow position: | chr14:43556069-43556330 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 11-210 |
| Cow position: | chr14:23932685-23932889 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 52, 94 |
| Conread position: | 11-255 |
| Cow position: | chr14:27978453-27978699 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 11-260 |
| Cow position: | chr14:5514025-5514278 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-260 |
| Cow position: | chr14:15274744-15274490 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr14:5530152-5530409 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 11-261 |
| Cow position: | chr14:13304047-13304304 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 12-259 |
| Cow position: | chr14:751661-751914 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 12-259 |
| Cow position: | chr14:12611506-12611759 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 12-259 |
| Cow position: | chr14:35425216-35425466 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 15-261 |
| Cow position: | chr14:13780050-13780303 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 15-261 |
| Cow position: | chr14:20783566-20783819 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 16-252 |
| Cow position: | chr14:11476193-11475952 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 16-261 |
| Cow position: | chr14:48253220-48252977 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 20-239 |
| Cow position: | chr14:32448059-32448281 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 20-255 |
| Cow position: | chr14:37225257-37225497 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 21-239 |
| Cow position: | chr14:14032130-14031916 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 21-240 |
| Cow position: | chr14:35930694-35930914 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 23-243 |
| Cow position: | chr14:2287373-2287596 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 23-261 |
| Cow position: | chr14:22030343-22030098 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 24-220 |
| Cow position: | chr14:37454838-37454639 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 36-252 |
| Cow position: | chr14:48826396-48826615 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 36-261 |
| Cow position: | chr14:44380469-44380697 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 37-261 |
| Cow position: | chr14:45086343-45086572 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 42-252 |
| Cow position: | chr14:40167549-40167335 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 48-261 |
| Cow position: | chr14:30660935-30660719 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 80-261 |
| Cow position: | chr14:45082284-45082466 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 94-240 |
| Cow position: | chr14:33392740-33392597 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 97-233 |
| Cow position: | chr14:46390444-46390308 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 98-243 |
| Cow position: | chr14:30583214-30583069 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 109-261 |
| Cow position: | chr14:13462655-13462807 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 134, 101 |
Show alignments to all cow chromosomes.