Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-259
Cow position: chr15:5981443-5981704 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 140

Conread position: 2-252
Cow position: chr15:4672517-4672771 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 58, 34

Conread position: 4-255
Cow position: chr15:4962717-4962955 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 32

Conread position: 4-255
Cow position: chr15:32067523-32067268 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 58, 32

Conread position: 4-257
Cow position: chr15:8751483-8751739 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 29

Conread position: 4-261
Cow position: chr15:21664655-21664392 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 19, 28

Conread position: 4-261
Cow position: chr15:32492800-32492534 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 29

Conread position: 7-229
Cow position: chr15:1773595-1773815 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 57, 16

Conread position: 7-242
Cow position: chr15:2646558-2646325 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 53, 16

Conread position: 7-242
Cow position: chr15:25205913-25205678 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr15:4197558-4197796 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 53, 14

Conread position: 7-243
Cow position: chr15:6561678-6561916 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-252
Cow position: chr15:4686817-4687067 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 34

Conread position: 7-252
Cow position: chr15:14581269-14581024 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 16

Conread position: 7-252
Cow position: chr15:28489058-28488816 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 101, 16

Conread position: 7-252
Cow position: chr15:53410005-53410243 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 102, 14

Conread position: 7-254
Cow position: chr15:6613813-6614063 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 16

Conread position: 7-254
Cow position: chr15:24794915-24795159 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 16

Conread position: 7-255
Cow position: chr15:107092-107342 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr15:2013650-2013902 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr15:6383062-6382820 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 102, 23

Conread position: 7-255
Cow position: chr15:17036565-17036317 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 23, 45

Conread position: 7-255
Cow position: chr15:35898685-35898435 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr15:41659259-41659509 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr15:5010540-5010285 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 53, 14

Conread position: 7-261
Cow position: chr15:4386847-4387106 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 55, 22

Conread position: 7-261
Cow position: chr15:4766283-4766542 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 30, 0

Conread position: 7-261
Cow position: chr15:7564088-7564346 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 53, 14

Conread position: 7-261
Cow position: chr15:15346016-15345759 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 25

Conread position: 7-261
Cow position: chr15:18577809-18578062 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 35

Conread position: 7-261
Cow position: chr15:19736964-19736708 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 55, 14

Conread position: 8-239
Cow position: chr15:32479512-32479271 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 213

Conread position: 8-252
Cow position: chr15:25653974-25653728 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 13

Conread position: 8-255
Cow position: chr15:32712330-32712578 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 203

Conread position: 8-259
Cow position: chr15:33122470-33122725 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 15

Conread position: 8-271
Cow position: chr15:21450775-21451041 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 53, 129

Conread position: 9-233
Cow position: chr15:580520-580742 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 100, 19

Conread position: 9-261
Cow position: chr15:3260225-3259975 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 87

Conread position: 9-261
Cow position: chr15:35752213-35751956 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 53, 24

Conread position: 9-261
Cow position: chr15:51218816-51219073 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 118

Conread position: 10-242
Cow position: chr15:58750-58980 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 11

Conread position: 10-243
Cow position: chr15:50148176-50148415 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 12, 190

Conread position: 10-252
Cow position: chr15:50122836-50122596 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 42

Conread position: 10-260
Cow position: chr15:3008747-3008498 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 87

Conread position: 11-240
Cow position: chr15:4951192-4951426 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 49, 25

Conread position: 11-250
Cow position: chr15:7892255-7892011 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 11-254
Cow position: chr15:42531012-42531254 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 57, 20

Conread position: 11-261
Cow position: chr15:2901169-2900911 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr15:4726294-4726551 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 20

Conread position: 11-261
Cow position: chr15:4923238-4923494 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr15:7838361-7838618 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr15:20411690-20411945 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr15:24296183-24296436 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 51, 20

Conread position: 11-264
Cow position: chr15:6279571-6279826 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 137

Conread position: 12-172
Cow position: chr15:6485675-6485838 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 9

Conread position: 12-243
Cow position: chr15:4141642-4141408 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 48, 99

Conread position: 12-255
Cow position: chr15:4652468-4652711 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 11

Conread position: 12-261
Cow position: chr15:18331741-18331484 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 20

Conread position: 12-262
Cow position: chr15:35646586-35646334 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 59, 86

Conread position: 12-274
Cow position: chr15:611201-610924 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 58

Conread position: 13-261
Cow position: chr15:50869431-50869687 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 23

Conread position: 14-261
Cow position: chr15:6154831-6154577 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 17

Conread position: 16-261
Cow position: chr15:31359963-31360213 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 11, 16

Conread position: 18-259
Cow position: chr15:368548-368306 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 18

Conread position: 20-261
Cow position: chr15:329434-329682 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 41, 75

Conread position: 21-260
Cow position: chr15:2077755-2077997 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 10

Conread position: 23-255
Cow position: chr15:9912127-9911891 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 13

Conread position: 24-256
Cow position: chr15:4679389-4679621 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 146

Conread position: 36-210
Cow position: chr15:1879128-1878950 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 36-218
Cow position: chr15:8100577-8100765 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 181

Conread position: 36-252
Cow position: chr15:10478409-10478190 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 119

Conread position: 36-255
Cow position: chr15:53339337-53339564 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 76

Conread position: 36-259
Cow position: chr15:1767954-1768175 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 25, 138

Conread position: 36-259
Cow position: chr15:8698810-8698587 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 37

Conread position: 36-261
Cow position: chr15:6590993-6590767 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 24

Conread position: 36-264
Cow position: chr15:1765434-1765668 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 26, 110

Conread position: 37-255
Cow position: chr15:3890029-3890246 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 26

Conread position: 38-243
Cow position: chr15:6079864-6080072 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 176

Conread position: 41-252
Cow position: chr15:4916301-4916511 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 27

Conread position: 41-257
Cow position: chr15:51716542-51716765 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 13

Conread position: 42-257
Cow position: chr15:7929701-7929914 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 142

Conread position: 43-240
Cow position: chr15:35736926-35737122 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 66, 12

Conread position: 43-259
Cow position: chr15:36668833-36669051 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 19, 53

Conread position: 46-243
Cow position: chr15:7235454-7235654 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 168

Conread position: 50-220
Cow position: chr15:1238821-1238991 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 59, 160

Conread position: 50-259
Cow position: chr15:1299411-1299183 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 178

Conread position: 55-257
Cow position: chr15:51675856-51676067 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 55, 162

Conread position: 62-255
Cow position: chr15:7939587-7939777 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 34

Conread position: 69-259
Cow position: chr15:31859801-31859609 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 142

Conread position: 97-252
Cow position: chr15:6552598-6552443 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 119

Conread position: 102-253
Cow position: chr15:6329242-6329393 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 109

Conread position: 115-255
Cow position: chr15:1783533-1783672 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.