Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-259 |
| Cow position: | chr16:28158311-28158572 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 2-252 |
| Cow position: | chr16:40557195-40556949 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 3-248 |
| Cow position: | chr16:5871636-5871879 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 3-261 |
| Cow position: | chr16:27732632-27732375 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 4-240 |
| Cow position: | chr16:34531041-34531271 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 4-261 |
| Cow position: | chr16:25442372-25442636 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 6-205 |
| Cow position: | chr16:10565031-10564833 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 7-229 |
| Cow position: | chr16:2238015-2237796 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 7-242 |
| Cow position: | chr16:27594256-27594493 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-252 |
| Cow position: | chr16:2482385-2482140 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 7-255 |
| Cow position: | chr16:3088455-3088205 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr16:5527636-5527387 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr16:5662588-5662838 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr16:10374847-10374603 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr16:19778900-19778653 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 7-255 |
| Cow position: | chr16:25086366-25086610 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 7-255 |
| Cow position: | chr16:29047771-29048021 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 35, 211 |
| Conread position: | 7-255 |
| Cow position: | chr16:43896511-43896263 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 102, 209 |
| Conread position: | 7-259 |
| Cow position: | chr16:25258552-25258807 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-261 |
| Cow position: | chr16:37480107-37479849 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 8-252 |
| Cow position: | chr16:33280-33520 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 9-210 |
| Cow position: | chr16:48911693-48911484 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 9-242 |
| Cow position: | chr16:25001543-25001308 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 53, 190 |
| Conread position: | 9-255 |
| Cow position: | chr16:20202724-20202974 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 9-261 |
| Cow position: | chr16:2410181-2409927 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 9-261 |
| Cow position: | chr16:23809108-23809361 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 10-202 |
| Cow position: | chr16:49255481-49255286 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 10-255 |
| Cow position: | chr16:16240537-16240295 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 10-259 |
| Cow position: | chr16:1860987-1861240 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 10-261 |
| Cow position: | chr16:7675699-7675451 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 10-261 |
| Cow position: | chr16:14665063-14664806 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 10-261 |
| Cow position: | chr16:15185828-15186085 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 11-233 |
| Cow position: | chr16:1432939-1433164 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 11-252 |
| Cow position: | chr16:9931486-9931729 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 11-252 |
| Cow position: | chr16:23984050-23984294 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 11-261 |
| Cow position: | chr16:838068-838319 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr16:5485479-5485730 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr16:10439008-10439265 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr16:25456731-25456474 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-205 |
| Cow position: | chr16:47627895-47627702 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 12-261 |
| Cow position: | chr16:1566703-1566455 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 12-261 |
| Cow position: | chr16:8815355-8815101 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 12-262 |
| Cow position: | chr16:25342721-25342979 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 13-259 |
| Cow position: | chr16:51084909-51085162 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 14-252 |
| Cow position: | chr16:2726460-2726219 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 19-238 |
| Cow position: | chr16:16898211-16898435 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 196 |
| Conread position: | 19-261 |
| Cow position: | chr16:55049144-55048900 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 20-259 |
| Cow position: | chr16:3330694-3330934 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 20-259 |
| Cow position: | chr16:49221149-49220913 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 20-261 |
| Cow position: | chr16:23535139-23534894 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 21-259 |
| Cow position: | chr16:23801385-23801139 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 198 |
| Conread position: | 21-259 |
| Cow position: | chr16:41685493-41685253 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 41, 93 |
| Conread position: | 36-226 |
| Cow position: | chr16:29034718-29034908 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 75, 175 |
| Conread position: | 36-233 |
| Cow position: | chr16:16519995-16519794 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 36-243 |
| Cow position: | chr16:5119245-5119032 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 180 |
| Conread position: | 36-252 |
| Cow position: | chr16:1959841-1959625 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 36-256 |
| Cow position: | chr16:32937296-32937514 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 36-257 |
| Cow position: | chr16:18667162-18667389 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 133 |
| Conread position: | 36-257 |
| Cow position: | chr16:49233706-49233487 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 41-213 |
| Cow position: | chr16:53092266-53092441 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 41-243 |
| Cow position: | chr16:28196456-28196254 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 169 |
| Conread position: | 43-228 |
| Cow position: | chr16:5890788-5890972 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 43-259 |
| Cow position: | chr16:18497529-18497311 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 45-259 |
| Cow position: | chr16:42735790-42735581 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 50-259 |
| Cow position: | chr16:28169528-28169317 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 71-264 |
| Cow position: | chr16:27712367-27712175 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 90-243 |
| Cow position: | chr16:20193338-20193185 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 99-252 |
| Cow position: | chr16:23251127-23250974 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 106-252 |
| Cow position: | chr16:4474755-4474610 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.