Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 3-243 |
| Cow position: | chr17:1704194-1704432 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 3-255 |
| Cow position: | chr17:4061428-4061675 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 38 |
| Conread position: | 3-261 |
| Cow position: | chr17:2077670-2077411 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 4-255 |
| Cow position: | chr17:11086408-11086154 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 4-261 |
| Cow position: | chr17:24028685-24028421 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 4-261 |
| Cow position: | chr17:40806124-40806388 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 6-259 |
| Cow position: | chr17:16121258-16121027 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 237, 15 |
| Conread position: | 7-241 |
| Cow position: | chr17:9080097-9079861 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 7-241 |
| Cow position: | chr17:15437107-15437343 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-243 |
| Cow position: | chr17:733022-732783 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 7-243 |
| Cow position: | chr17:3654966-3654728 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr17:13967250-13967487 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr17:14936647-14936410 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr17:15142032-15141784 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 7-255 |
| Cow position: | chr17:27793458-27793210 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr17:39049538-39049788 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 7-259 |
| Cow position: | chr17:2263464-2263718 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 101, 203 |
| Conread position: | 7-259 |
| Cow position: | chr17:23323125-23322869 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr17:24783485-24783741 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr17:34157445-34157701 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr17:42266991-42267235 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 7-262 |
| Cow position: | chr17:20403742-20404001 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 9-255 |
| Cow position: | chr17:15326603-15326853 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 11-210 |
| Cow position: | chr17:2580946-2581151 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr17:14240829-14241085 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr17:15852017-15852274 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-242 |
| Cow position: | chr17:23038892-23039123 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 13-261 |
| Cow position: | chr17:3640580-3640324 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 13-261 |
| Cow position: | chr17:28027178-28026923 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 14-261 |
| Cow position: | chr17:6069871-6070124 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 16-259 |
| Cow position: | chr17:15372544-15372791 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 16-259 |
| Cow position: | chr17:20099147-20098898 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 21-255 |
| Cow position: | chr17:2246754-2246513 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 17, 207 |
| Conread position: | 21-257 |
| Cow position: | chr17:21418887-21419131 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 24-252 |
| Cow position: | chr17:1656532-1656312 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 34-256 |
| Cow position: | chr17:14039689-14039463 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 36-252 |
| Cow position: | chr17:8203287-8203502 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 36-259 |
| Cow position: | chr17:20086422-20086197 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 36-259 |
| Cow position: | chr17:29302104-29302336 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 187 |
| Conread position: | 41-261 |
| Cow position: | chr17:1786605-1786387 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 43-255 |
| Cow position: | chr17:182935-183144 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 43-259 |
| Cow position: | chr17:22133627-22133845 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 63-255 |
| Cow position: | chr17:39821-40013 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 147 |
| Conread position: | 70-243 |
| Cow position: | chr17:17257302-17257129 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 75-252 |
| Cow position: | chr17:6121178-6121354 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 92-255 |
| Cow position: | chr17:2554865-2554702 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 101-243 |
| Cow position: | chr17:20415041-20414899 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 107 |
| Conread position: | 108-242 |
| Cow position: | chr17:19980709-19980576 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 108-257 |
| Cow position: | chr17:4346152-4346002 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 135, 102 |
Show alignments to all cow chromosomes.