Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-206 |
| Cow position: | chr21:28736800-28736999 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 2-259 |
| Cow position: | chr21:2539475-2539214 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 212 |
| Conread position: | 4-243 |
| Cow position: | chr21:26635556-26635310 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 213 |
| Conread position: | 4-252 |
| Cow position: | chr21:31250613-31250848 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 4-261 |
| Cow position: | chr21:30597867-30597604 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 4-261 |
| Cow position: | chr21:31514713-31514449 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 7-170 |
| Cow position: | chr21:34822601-34822435 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-241 |
| Cow position: | chr21:1286604-1286370 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 204 |
| Conread position: | 7-243 |
| Cow position: | chr21:38802046-38802284 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-252 |
| Cow position: | chr21:37372844-37373081 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 7-255 |
| Cow position: | chr21:6414415-6414165 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-256 |
| Cow position: | chr21:33710758-33711009 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-259 |
| Cow position: | chr21:4588397-4588150 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 7-259 |
| Cow position: | chr21:19612369-19612625 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-259 |
| Cow position: | chr21:26836796-26837055 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 8-259 |
| Cow position: | chr21:26849416-26849164 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 9-252 |
| Cow position: | chr21:2512462-2512704 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 9-255 |
| Cow position: | chr21:147537-147780 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 9-259 |
| Cow position: | chr21:2417823-2418069 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 10-258 |
| Cow position: | chr21:18816638-18816395 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 10-259 |
| Cow position: | chr21:11507227-11507479 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 35, 201 |
| Conread position: | 11-259 |
| Cow position: | chr21:361275-361537 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 202 |
| Conread position: | 11-261 |
| Cow position: | chr21:33253793-33254048 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr21:34035374-34035125 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 11-261 |
| Cow position: | chr21:40270062-40269805 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-252 |
| Cow position: | chr21:10851690-10851933 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 12-258 |
| Cow position: | chr21:47942559-47942810 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 49, 158 |
| Conread position: | 13-239 |
| Cow position: | chr21:21025078-21025297 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 13-243 |
| Cow position: | chr21:3780388-3780620 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 14-252 |
| Cow position: | chr21:5018753-5018995 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 14-256 |
| Cow position: | chr21:26649087-26648854 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 15-252 |
| Cow position: | chr21:39426686-39426920 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 16-258 |
| Cow position: | chr21:1688544-1688306 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 16-261 |
| Cow position: | chr21:2880211-2879959 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-261 |
| Cow position: | chr21:47646945-47647199 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 19-261 |
| Cow position: | chr21:27069348-27069097 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 15, 204 |
| Conread position: | 20-239 |
| Cow position: | chr21:36979937-36980153 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 20-255 |
| Cow position: | chr21:28257045-28257280 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 36-229 |
| Cow position: | chr21:30675-30872 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 36-252 |
| Cow position: | chr21:13298227-13298447 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 36-257 |
| Cow position: | chr21:7591306-7591519 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 36-259 |
| Cow position: | chr21:2712549-2712761 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 36-261 |
| Cow position: | chr21:44764315-44764088 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 42-259 |
| Cow position: | chr21:468546-468762 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 42-262 |
| Cow position: | chr21:20742991-20742772 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 43-218 |
| Cow position: | chr21:28613976-28614146 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 43-226 |
| Cow position: | chr21:27285108-27285289 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 43-259 |
| Cow position: | chr21:9893621-9893833 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 200, 18 |
| Conread position: | 60-252 |
| Cow position: | chr21:27567410-27567600 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 70-243 |
| Cow position: | chr21:27150154-27150327 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 107-252 |
| Cow position: | chr21:35143980-35143835 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 109 |
Show alignments to all cow chromosomes.