Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-238 |
| Cow position: | chr22:30653957-30654194 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 2-255 |
| Cow position: | chr22:5313711-5313976 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 25, 210 |
| Conread position: | 7-190 |
| Cow position: | chr22:24951995-24952181 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-242 |
| Cow position: | chr22:10908398-10908161 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr22:296884-297138 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr22:538548-538796 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 7-255 |
| Cow position: | chr22:16202351-16202600 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr22:21034952-21034702 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 7-255 |
| Cow position: | chr22:30677276-30677026 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 7-255 |
| Cow position: | chr22:32283244-32282994 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr22:37268605-37268854 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 7-258 |
| Cow position: | chr22:6022090-6022343 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-260 |
| Cow position: | chr22:695054-695305 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 7-261 |
| Cow position: | chr22:45014789-45015040 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 194, 16 |
| Conread position: | 7-262 |
| Cow position: | chr22:13766795-13767053 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 8-170 |
| Cow position: | chr22:23509067-23508899 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 8-243 |
| Cow position: | chr22:20239398-20239163 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 8-254 |
| Cow position: | chr22:15852865-15853111 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 8-255 |
| Cow position: | chr22:44368044-44367794 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 8-264 |
| Cow position: | chr22:27308339-27308079 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 9-164 |
| Cow position: | chr22:18814923-18814767 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 9-233 |
| Cow position: | chr22:12730257-12730028 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 9-243 |
| Cow position: | chr22:44492494-44492724 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 9-252 |
| Cow position: | chr22:46580279-46580033 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 9-259 |
| Cow position: | chr22:13773959-13774208 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 9-259 |
| Cow position: | chr22:34601029-34601281 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 10-243 |
| Cow position: | chr22:11803609-11803377 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 10-255 |
| Cow position: | chr22:325743-325489 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 12, 212 |
| Conread position: | 10-255 |
| Cow position: | chr22:15955578-15955340 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 10-261 |
| Cow position: | chr22:3276915-3276661 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-261 |
| Cow position: | chr22:46585125-46584873 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 11-237 |
| Cow position: | chr22:1268314-1268083 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 64, 210 |
| Conread position: | 11-260 |
| Cow position: | chr22:21195059-21194803 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 11-261 |
| Cow position: | chr22:17327019-17326762 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr22:42992614-42992865 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr22:44397870-44398125 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-226 |
| Cow position: | chr22:35905944-35905727 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 12-259 |
| Cow position: | chr22:1281295-1281041 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 12-259 |
| Cow position: | chr22:23752267-23752015 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 12-259 |
| Cow position: | chr22:29011834-29011581 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 202 |
| Conread position: | 12-261 |
| Cow position: | chr22:21590862-21591118 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 12-261 |
| Cow position: | chr22:31333609-31333353 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 13-261 |
| Cow position: | chr22:19142245-19141992 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 14-259 |
| Cow position: | chr22:559266-559015 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 16-261 |
| Cow position: | chr22:34169778-34170031 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-261 |
| Cow position: | chr22:37292235-37291982 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-261 |
| Cow position: | chr22:39468075-39467822 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 17-252 |
| Cow position: | chr22:14824256-14824016 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 19-261 |
| Cow position: | chr22:44935409-44935656 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 19-264 |
| Cow position: | chr22:29037118-29037360 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 20-259 |
| Cow position: | chr22:3803628-3803874 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 20-261 |
| Cow position: | chr22:6333157-6333403 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 36-252 |
| Cow position: | chr22:46614766-46614984 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 36-259 |
| Cow position: | chr22:3305138-3304910 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 36-259 |
| Cow position: | chr22:8736880-8736656 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 36-259 |
| Cow position: | chr22:30129046-30129272 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 178 |
| Conread position: | 36-259 |
| Cow position: | chr22:30146695-30146921 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 178 |
| Conread position: | 40-261 |
| Cow position: | chr22:18605333-18605107 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 41-174 |
| Cow position: | chr22:44478216-44478350 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 41-252 |
| Cow position: | chr22:1323627-1323835 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 41-259 |
| Cow position: | chr22:1880278-1880498 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 169 |
| Conread position: | 41-259 |
| Cow position: | chr22:44518169-44517947 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 171 |
| Conread position: | 42-252 |
| Cow position: | chr22:2563283-2563075 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 42-259 |
| Cow position: | chr22:37141988-37142204 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 44-259 |
| Cow position: | chr22:11807264-11807054 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 46-259 |
| Cow position: | chr22:8120300-8120088 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 55-252 |
| Cow position: | chr22:11033824-11034027 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 63-243 |
| Cow position: | chr22:29499036-29499216 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 45, 147 |
| Conread position: | 70-218 |
| Cow position: | chr22:14883967-14884112 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 84-259 |
| Cow position: | chr22:8880615-8880791 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 95-288 |
| Cow position: | chr22:40371573-40371763 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 148, 68 |
| Conread position: | 96-259 |
| Cow position: | chr22:37135292-37135455 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 113 |
| Conread position: | 107-243 |
| Cow position: | chr22:29352914-29353049 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 111-252 |
| Cow position: | chr22:44459196-44459339 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 106 |
| Conread position: | 114-259 |
| Cow position: | chr22:6501366-6501222 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 115-255 |
| Cow position: | chr22:21336503-21336642 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.