Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-259
Cow position: chr23:29450905-29450638 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 54, 132

Conread position: 4-255
Cow position: chr23:36029952-36029699 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 57, 32

Conread position: 4-261
Cow position: chr23:3879660-3879394 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 28

Conread position: 4-261
Cow position: chr23:31164231-31164493 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 57, 16

Conread position: 7-210
Cow position: chr23:38691925-38692131 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 16

Conread position: 7-242
Cow position: chr23:4435086-4435324 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 55, 14

Conread position: 7-243
Cow position: chr23:23172212-23172448 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr23:32351328-32351090 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr23:41141793-41141555 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr23:7314344-7314594 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 53, 16

Conread position: 7-257
Cow position: chr23:1012379-1012133 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 102, 84

Conread position: 7-257
Cow position: chr23:22145872-22145618 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 55, 16

Conread position: 7-261
Cow position: chr23:11780217-11780471 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 15, 36

Conread position: 8-252
Cow position: chr23:21821868-21821638 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 9-243
Cow position: chr23:608153-608384 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 99, 185

Conread position: 9-261
Cow position: chr23:965060-964803 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 24

Conread position: 9-261
Cow position: chr23:1957603-1957852 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 27

Conread position: 9-261
Cow position: chr23:2759333-2759590 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 53, 24

Conread position: 9-264
Cow position: chr23:4639157-4638903 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 18

Conread position: 10-259
Cow position: chr23:16055210-16055461 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 10-261
Cow position: chr23:20154791-20154535 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 23

Conread position: 11-209
Cow position: chr23:16497809-16497609 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 25

Conread position: 11-240
Cow position: chr23:14972521-14972287 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 25

Conread position: 11-259
Cow position: chr23:5873137-5872882 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 25

Conread position: 11-261
Cow position: chr23:19490986-19491243 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr23:28304350-28304607 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 12-179
Cow position: chr23:4361433-4361599 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 96, 26

Conread position: 12-254
Cow position: chr23:4818461-4818705 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 9

Conread position: 13-255
Cow position: chr23:22168077-22168324 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 18

Conread position: 13-261
Cow position: chr23:2793822-2793580 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 19

Conread position: 15-252
Cow position: chr23:2025641-2025401 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 47, 21

Conread position: 16-252
Cow position: chr23:31648593-31648350 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 201

Conread position: 16-261
Cow position: chr23:14961512-14961260 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 46, 15

Conread position: 21-255
Cow position: chr23:15178508-15178747 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 40, 15

Conread position: 21-261
Cow position: chr23:15218443-15218196 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 41, 10

Conread position: 22-255
Cow position: chr23:4513929-4514167 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 14

Conread position: 22-261
Cow position: chr23:4890132-4890374 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 40, 9

Conread position: 23-243
Cow position: chr23:11714419-11714194 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 37, 8

Conread position: 26-258
Cow position: chr23:2439833-2439600 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 44

Conread position: 36-295
Cow position: chr23:8287400-8287664 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 180

Conread position: 41-252
Cow position: chr23:15527047-15527257 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 68, 175

Conread position: 42-295
Cow position: chr23:25677826-25677579 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 82-223
Cow position: chr23:23283036-23283177 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 129

Conread position: 91-255
Cow position: chr23:3707923-3708087 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 120

Conread position: 102-259
Cow position: chr23:1400674-1400519 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 9, 59

Show alignments to all cow chromosomes.