Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-255 |
| Cow position: | chr24:6658970-6658721 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 4-252 |
| Cow position: | chr24:9090536-9090291 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 6-179 |
| Cow position: | chr24:6436006-6436182 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 7-180 |
| Cow position: | chr24:16083257-16083080 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-213 |
| Cow position: | chr24:6407558-6407765 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 7-228 |
| Cow position: | chr24:17322216-17322437 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 7-243 |
| Cow position: | chr24:310391-310629 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr24:7063066-7063302 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr24:13233782-13234010 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 7-243 |
| Cow position: | chr24:23504336-23504098 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr24:13044104-13043854 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-255 |
| Cow position: | chr24:13189703-13189937 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 7-255 |
| Cow position: | chr24:33934908-33935161 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 7-255 |
| Cow position: | chr24:44019032-44019282 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-259 |
| Cow position: | chr24:6323833-6323571 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 7-260 |
| Cow position: | chr24:6337907-6338162 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 7-261 |
| Cow position: | chr24:12204817-12204562 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 7-261 |
| Cow position: | chr24:14755522-14755779 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 7-261 |
| Cow position: | chr24:29188814-29189068 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 7-264 |
| Cow position: | chr24:12127584-12127326 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 8-242 |
| Cow position: | chr24:6963226-6962990 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 8-269 |
| Cow position: | chr24:38639052-38639306 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 9-167 |
| Cow position: | chr24:6142597-6142756 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 9-255 |
| Cow position: | chr24:12149770-12149516 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-259 |
| Cow position: | chr24:7089473-7089221 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 9-261 |
| Cow position: | chr24:147087-146828 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-261 |
| Cow position: | chr24:19834929-19835188 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 10-251 |
| Cow position: | chr24:36558023-36557802 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 10-261 |
| Cow position: | chr24:5991698-5991443 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-261 |
| Cow position: | chr24:6023560-6023307 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-261 |
| Cow position: | chr24:6036514-6036769 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 11-168 |
| Cow position: | chr24:11151709-11151549 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 11-239 |
| Cow position: | chr24:36723353-36723585 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 11-242 |
| Cow position: | chr24:9545579-9545815 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-252 |
| Cow position: | chr24:8606341-8606590 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-255 |
| Cow position: | chr24:12087724-12087973 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-255 |
| Cow position: | chr24:12334206-12333967 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr24:14383103-14382849 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-262 |
| Cow position: | chr24:22972588-22972848 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-255 |
| Cow position: | chr24:13179491-13179248 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 14-261 |
| Cow position: | chr24:20286383-20286131 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 15-259 |
| Cow position: | chr24:19469072-19468829 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 21-261 |
| Cow position: | chr24:38585593-38585354 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 26 |
| Conread position: | 24-239 |
| Cow position: | chr24:35869040-35868827 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 36-261 |
| Cow position: | chr24:37199365-37199134 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 43-259 |
| Cow position: | chr24:12238848-12239070 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 93-261 |
| Cow position: | chr24:40468781-40468952 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 94-255 |
| Cow position: | chr24:12163844-12164005 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 108-258 |
| Cow position: | chr24:25438229-25438380 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 133, 100 |
| Conread position: | 110-261 |
| Cow position: | chr24:23094395-23094243 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 133, 105 |
| Conread position: | 126-271 |
| Cow position: | chr24:39678956-39679100 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.