Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-257 |
| Cow position: | chr28:7028303-7028047 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 4-252 |
| Cow position: | chr28:7003473-7003725 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 4-252 |
| Cow position: | chr28:29821474-29821715 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 7-191 |
| Cow position: | chr28:9180100-9180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 7-225 |
| Cow position: | chr28:6786741-6786956 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 7-243 |
| Cow position: | chr28:1954843-1955076 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 7-243 |
| Cow position: | chr28:9288433-9288668 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 7-243 |
| Cow position: | chr28:24590340-24590577 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-255 |
| Cow position: | chr28:1459578-1459828 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-258 |
| Cow position: | chr28:17381387-17381134 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 7-259 |
| Cow position: | chr28:5766214-5766470 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 7-259 |
| Cow position: | chr28:22231810-22231553 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 127 |
| Conread position: | 7-261 |
| Cow position: | chr28:1506349-1506607 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 211 |
| Conread position: | 7-261 |
| Cow position: | chr28:18518967-18518706 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 7-261 |
| Cow position: | chr28:33638025-33638287 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 7-348 |
| Cow position: | chr28:22041802-22041458 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 8-182 |
| Cow position: | chr28:5912780-5912608 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 8-252 |
| Cow position: | chr28:33253795-33254044 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 8-255 |
| Cow position: | chr28:7811895-7812153 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 9-261 |
| Cow position: | chr28:5750219-5749962 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-261 |
| Cow position: | chr28:13461458-13461709 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 10-210 |
| Cow position: | chr28:10615513-10615314 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 83 |
| Conread position: | 10-243 |
| Cow position: | chr28:6778454-6778220 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 11-206 |
| Cow position: | chr28:17665823-17665627 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-255 |
| Cow position: | chr28:3190768-3190519 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 11-255 |
| Cow position: | chr28:10580390-10580139 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 11-259 |
| Cow position: | chr28:5938972-5939227 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 11-261 |
| Cow position: | chr28:2085949-2086206 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr28:8380521-8380778 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 11-261 |
| Cow position: | chr28:12408741-12408486 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr28:14703899-14703642 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr28:15034627-15034371 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-240 |
| Cow position: | chr28:17389886-17390119 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 12-252 |
| Cow position: | chr28:21360981-21361223 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 199 |
| Conread position: | 12-259 |
| Cow position: | chr28:5799775-5800031 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 12-260 |
| Cow position: | chr28:8719468-8719218 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 201 |
| Conread position: | 12-261 |
| Cow position: | chr28:32790907-32790658 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 13-255 |
| Cow position: | chr28:7059180-7058935 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 200 |
| Conread position: | 13-259 |
| Cow position: | chr28:25760959-25761203 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 15-261 |
| Cow position: | chr28:34595720-34595973 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 16-171 |
| Cow position: | chr28:5567612-5567774 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 16-259 |
| Cow position: | chr28:10496007-10495762 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 16-261 |
| Cow position: | chr28:12151814-12152067 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 20-255 |
| Cow position: | chr28:22259661-22259421 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 20-261 |
| Cow position: | chr28:1166398-1166153 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 20-261 |
| Cow position: | chr28:1813440-1813193 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 20-261 |
| Cow position: | chr28:7741925-7742174 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 20-262 |
| Cow position: | chr28:26424766-26424519 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 21-261 |
| Cow position: | chr28:784149-784398 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 17, 202 |
| Conread position: | 36-252 |
| Cow position: | chr28:1385901-1385678 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 41-288 |
| Cow position: | chr28:23023745-23023995 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 43-239 |
| Cow position: | chr28:21566967-21567157 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 45-258 |
| Cow position: | chr28:15684993-15685204 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 49-255 |
| Cow position: | chr28:24669125-24669330 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 57-259 |
| Cow position: | chr28:31591094-31591298 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 95-259 |
| Cow position: | chr28:10067489-10067321 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 114-259 |
| Cow position: | chr28:2117587-2117733 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 127, 95 |
Show alignments to all cow chromosomes.