Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-257
Cow position: chr3:48229152-48228899 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 109, 28

Conread position: 2-261
Cow position: chr3:53516964-53517230 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 29

Conread position: 3-243
Cow position: chr3:56295540-56295786 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 57, 213

Conread position: 4-259
Cow position: chr3:20382392-20382654 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 23, 28

Conread position: 4-261
Cow position: chr3:72631421-72631677 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 58, 15

Conread position: 4-261
Cow position: chr3:78026058-78025800 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 81, 27

Conread position: 4-273
Cow position: chr3:21258153-21257885 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 17, 31

Conread position: 6-261
Cow position: chr3:19880012-19880265 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 102, 36

Conread position: 7-183
Cow position: chr3:30330757-30330578 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 16

Conread position: 7-241
Cow position: chr3:47080047-47079811 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 14

Conread position: 7-243
Cow position: chr3:4287452-4287687 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr3:74058889-74059126 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 16

Conread position: 7-252
Cow position: chr3:32621679-32621433 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr3:2870151-2870401 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 53, 14

Conread position: 7-255
Cow position: chr3:6783730-6783981 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 7-255
Cow position: chr3:44925425-44925675 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 14

Conread position: 7-255
Cow position: chr3:68872392-68872142 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr3:2918832-2919083 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr3:3840154-3839899 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 55, 14

Conread position: 7-259
Cow position: chr3:7157357-7157100 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 53, 14

Conread position: 7-259
Cow position: chr3:31416379-31416635 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 14

Conread position: 7-261
Cow position: chr3:18812861-18813121 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 55, 14

Conread position: 7-261
Cow position: chr3:34029561-34029299 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 24

Conread position: 8-207
Cow position: chr3:65208546-65208751 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 63, 28

Conread position: 8-255
Cow position: chr3:64026771-64026525 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 52, 13

Conread position: 8-259
Cow position: chr3:2854082-2853833 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 54, 15

Conread position: 9-255
Cow position: chr3:40824756-40825004 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 24

Conread position: 9-261
Cow position: chr3:2709500-2709249 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 35

Conread position: 9-261
Cow position: chr3:7478551-7478294 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 53, 20

Conread position: 9-261
Cow position: chr3:30315912-30316167 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 20

Conread position: 9-261
Cow position: chr3:42448480-42448736 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 54, 14

Conread position: 10-241
Cow position: chr3:7247900-7248131 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 11

Conread position: 10-243
Cow position: chr3:18860784-18861018 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 12, 201

Conread position: 10-243
Cow position: chr3:68698606-68698374 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 44, 201

Conread position: 10-252
Cow position: chr3:37970413-37970656 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 207

Conread position: 10-252
Cow position: chr3:56327472-56327717 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 50, 23

Conread position: 10-255
Cow position: chr3:18462466-18462233 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 19

Conread position: 10-255
Cow position: chr3:40338781-40338535 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 12, 42

Conread position: 10-255
Cow position: chr3:56146670-56146917 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 52

Conread position: 10-259
Cow position: chr3:46859922-46859675 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 34

Conread position: 10-261
Cow position: chr3:45975874-45976120 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 155, 19

Conread position: 11-205
Cow position: chr3:33843465-33843266 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 73

Conread position: 11-220
Cow position: chr3:51938735-51938525 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 25

Conread position: 11-255
Cow position: chr3:30617556-30617311 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 20

Conread position: 11-259
Cow position: chr3:27864541-27864792 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 25

Conread position: 11-261
Cow position: chr3:23288970-23288712 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr3:49136201-49135944 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 49, 20

Conread position: 11-261
Cow position: chr3:69932470-69932213 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 12-243
Cow position: chr3:1742695-1742932 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 204

Conread position: 12-243
Cow position: chr3:2367973-2367738 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 48, 119

Conread position: 12-243
Cow position: chr3:41209238-41209002 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 204

Conread position: 12-255
Cow position: chr3:45034103-45034352 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 20

Conread position: 12-259
Cow position: chr3:19799808-19799560 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 96, 19

Conread position: 12-259
Cow position: chr3:63240881-63240625 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 206

Conread position: 12-259
Cow position: chr3:64356602-64356347 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 100

Conread position: 12-261
Cow position: chr3:5993716-5993467 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 50, 19

Conread position: 13-261
Cow position: chr3:66621564-66621817 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 49, 20

Conread position: 14-242
Cow position: chr3:34090116-34089889 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 23

Conread position: 14-261
Cow position: chr3:36877285-36877039 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 95, 17

Conread position: 16-241
Cow position: chr3:3524379-3524610 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 7, 16

Conread position: 16-252
Cow position: chr3:47087660-47087886 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 19

Conread position: 16-254
Cow position: chr3:15054337-15054091 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 94, 8

Conread position: 16-259
Cow position: chr3:58948901-58949147 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 197

Conread position: 16-261
Cow position: chr3:5952819-5952566 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 11, 21

Conread position: 16-261
Cow position: chr3:21181329-21181077 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 15

Conread position: 19-243
Cow position: chr3:34505978-34505752 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 31, 193

Conread position: 20-252
Cow position: chr3:57483353-57483116 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 42, 11

Conread position: 21-252
Cow position: chr3:56100318-56100079 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 197

Conread position: 22-254
Cow position: chr3:5884903-5885140 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 40, 8

Conread position: 23-243
Cow position: chr3:29329914-29329689 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 36, 8

Conread position: 23-243
Cow position: chr3:29575748-29575523 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 39, 8

Conread position: 23-243
Cow position: chr3:36863082-36862857 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 8

Conread position: 24-233
Cow position: chr3:46017424-46017623 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 83

Conread position: 32-281
Cow position: chr3:2906370-2906115 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 57, 9

Conread position: 36-255
Cow position: chr3:32200405-32200629 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 25, 47

Conread position: 36-255
Cow position: chr3:51364401-51364176 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 180

Conread position: 36-255
Cow position: chr3:68891182-68890958 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 179

Conread position: 36-257
Cow position: chr3:33634639-33634864 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 26, 94

Conread position: 36-261
Cow position: chr3:24444712-24444480 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 26, 60

Conread position: 36-261
Cow position: chr3:43191904-43191671 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 26, 186

Conread position: 37-259
Cow position: chr3:77424992-77425210 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 25, 67

Conread position: 41-259
Cow position: chr3:6687189-6687406 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 65

Conread position: 43-221
Cow position: chr3:63002160-63001981 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 68, 17

Conread position: 43-226
Cow position: chr3:27919829-27920011 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 66, 7

Conread position: 43-255
Cow position: chr3:19945646-19945862 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 64, 171

Conread position: 43-261
Cow position: chr3:49543809-49543591 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 66, 18

Conread position: 44-259
Cow position: chr3:6876778-6876569 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 17

Conread position: 48-261
Cow position: chr3:67769214-67769428 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 81

Conread position: 50-259
Cow position: chr3:51857283-51857072 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 58, 160

Conread position: 64-252
Cow position: chr3:56338851-56338662 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 45, 153

Conread position: 83-252
Cow position: chr3:19940371-19940537 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 108

Conread position: 86-259
Cow position: chr3:15188253-15188428 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 125

Conread position: 90-261
Cow position: chr3:74851701-74851528 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 119

Conread position: 107-255
Cow position: chr3:58784690-58784543 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 107-261
Cow position: chr3:10242119-10242274 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 136, 108

Conread position: 111-262
Cow position: chr3:4029202-4029354 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 132, 98

Conread position: 115-252
Cow position: chr3:38868061-38868197 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 117-252
Cow position: chr3:29580085-29580220 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 128, 93

Show alignments to all cow chromosomes.