Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-242
Cow position: chr4:99051-98815 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 107, 30

Conread position: 4-243
Cow position: chr4:33022478-33022233 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 27

Conread position: 4-254
Cow position: chr4:26876623-26876373 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 27

Conread position: 4-261
Cow position: chr4:33494715-33494979 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 58, 27

Conread position: 7-210
Cow position: chr4:51042120-51041920 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 38

Conread position: 7-242
Cow position: chr4:41960066-41960302 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 53, 14

Conread position: 7-243
Cow position: chr4:5881325-5881559 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 14

Conread position: 7-243
Cow position: chr4:9355545-9355783 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr4:32213335-32213576 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 7-243
Cow position: chr4:65665228-65665008 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 16

Conread position: 7-252
Cow position: chr4:27335097-27335349 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 14

Conread position: 7-255
Cow position: chr4:17502165-17501915 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr4:17924798-17924545 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 56, 24

Conread position: 7-255
Cow position: chr4:42405778-42406031 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 16

Conread position: 7-258
Cow position: chr4:60262990-60262746 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 105, 23

Conread position: 7-259
Cow position: chr4:5443659-5443403 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr4:17092696-17092442 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 14

Conread position: 7-259
Cow position: chr4:41955929-41956185 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 14

Conread position: 7-261
Cow position: chr4:25598322-25598062 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 24

Conread position: 7-264
Cow position: chr4:16060445-16060705 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 14

Conread position: 7-276
Cow position: chr4:20067557-20067288 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 31, 39

Conread position: 8-252
Cow position: chr4:20236231-20235986 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 22, 45

Conread position: 8-264
Cow position: chr4:16361085-16361348 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 8-288
Cow position: chr4:9847040-9846755 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 13

Conread position: 9-164
Cow position: chr4:45106633-45106792 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 24

Conread position: 9-243
Cow position: chr4:3126980-3127215 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 200

Conread position: 9-243
Cow position: chr4:30472380-30472617 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 51, 24

Conread position: 9-255
Cow position: chr4:160326-160573 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 213

Conread position: 9-255
Cow position: chr4:1929468-1929226 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 99, 24

Conread position: 9-259
Cow position: chr4:11109908-11109654 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 26, 48

Conread position: 9-261
Cow position: chr4:43318468-43318212 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 20

Conread position: 10-243
Cow position: chr4:18338024-18338258 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 201

Conread position: 10-252
Cow position: chr4:33071663-33071430 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 34, 51

Conread position: 11-180
Cow position: chr4:27300346-27300175 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 96, 11

Conread position: 11-253
Cow position: chr4:36897543-36897789 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 25

Conread position: 11-255
Cow position: chr4:1952400-1952151 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 51, 20

Conread position: 11-255
Cow position: chr4:6865340-6865092 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 49, 20

Conread position: 11-255
Cow position: chr4:67682364-67682613 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 51, 20

Conread position: 11-257
Cow position: chr4:16639777-16640028 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 11-259
Cow position: chr4:14819732-14819483 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 25

Conread position: 11-259
Cow position: chr4:18423349-18423100 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 53, 20

Conread position: 11-259
Cow position: chr4:28832887-28833136 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 11-261
Cow position: chr4:57985159-57985415 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 20

Conread position: 11-262
Cow position: chr4:34178075-34177827 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 25

Conread position: 12-242
Cow position: chr4:14386988-14387225 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 0

Conread position: 14-259
Cow position: chr4:14755501-14755249 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 22

Conread position: 15-261
Cow position: chr4:357080-357329 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 31, 16

Conread position: 16-261
Cow position: chr4:13494497-13494756 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 16

Conread position: 16-265
Cow position: chr4:12240053-12239796 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 206

Conread position: 19-261
Cow position: chr4:10882723-10882972 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 20-255
Cow position: chr4:12588504-12588743 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 42, 11

Conread position: 21-259
Cow position: chr4:8702739-8702975 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 41

Conread position: 22-261
Cow position: chr4:3356755-3356509 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 9

Conread position: 24-261
Cow position: chr4:43882285-43882528 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 12

Conread position: 27-243
Cow position: chr4:530607-530822 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 33, 41

Conread position: 36-224
Cow position: chr4:54969907-54970091 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 81

Conread position: 36-252
Cow position: chr4:6489175-6488954 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 48

Conread position: 36-252
Cow position: chr4:64216480-64216274 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 33

Conread position: 36-261
Cow position: chr4:1049072-1048840 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 147

Conread position: 38-255
Cow position: chr4:17244305-17244522 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 70, 172

Conread position: 39-218
Cow position: chr4:61986074-61985896 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 28

Conread position: 46-259
Cow position: chr4:14139582-14139793 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 20

Conread position: 50-255
Cow position: chr4:827419-827624 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 58, 160

Conread position: 50-259
Cow position: chr4:19005123-19004909 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 8, 163

Conread position: 75-243
Cow position: chr4:6267955-6267787 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 135

Conread position: 79-252
Cow position: chr4:20241759-20241931 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 137

Conread position: 80-259
Cow position: chr4:41191391-41191210 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 136

Conread position: 87-261
Cow position: chr4:46666170-46666345 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 156, 7

Conread position: 109-259
Cow position: chr4:43867465-43867616 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 133, 101

Conread position: 116-259
Cow position: chr4:68837720-68837575 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 95

Show alignments to all cow chromosomes.