Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-262
Cow position: chr5:18885262-18885003 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 110, 37

Conread position: 2-252
Cow position: chr5:48807472-48807218 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 59, 29

Conread position: 3-259
Cow position: chr5:7142794-7142548 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 108, 28

Conread position: 3-261
Cow position: chr5:3787199-3787464 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 33

Conread position: 4-243
Cow position: chr5:59061899-59062143 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 27

Conread position: 4-255
Cow position: chr5:51744545-51744794 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 105, 27

Conread position: 4-261
Cow position: chr5:4070482-4070743 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 70, 16

Conread position: 7-164
Cow position: chr5:4017929-4017769 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 16

Conread position: 7-188
Cow position: chr5:27908002-27907819 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 14

Conread position: 7-226
Cow position: chr5:4386506-4386716 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 14

Conread position: 7-241
Cow position: chr5:46777662-46777898 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 14

Conread position: 7-242
Cow position: chr5:23959061-23958824 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr5:4684535-4684298 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 53, 14

Conread position: 7-243
Cow position: chr5:4756914-4756676 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr5:6587319-6587081 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 16, 205

Conread position: 7-243
Cow position: chr5:35301367-35301605 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr5:40131333-40131095 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr5:58197285-58197523 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 14

Conread position: 7-252
Cow position: chr5:3965718-3965969 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 53, 16

Conread position: 7-252
Cow position: chr5:10774994-10774747 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 53, 14

Conread position: 7-252
Cow position: chr5:10842112-10841867 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 14

Conread position: 7-252
Cow position: chr5:26077923-26077679 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 204

Conread position: 7-252
Cow position: chr5:47829808-47829562 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 203

Conread position: 7-255
Cow position: chr5:307144-306895 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 16

Conread position: 7-255
Cow position: chr5:10813481-10813231 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr5:26184127-26184378 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 29

Conread position: 7-255
Cow position: chr5:41376585-41376335 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr5:987799-987543 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 16

Conread position: 7-259
Cow position: chr5:27197878-27198133 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 14

Conread position: 7-259
Cow position: chr5:32774034-32774290 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 16

Conread position: 7-259
Cow position: chr5:41960477-41960232 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 57, 14

Conread position: 7-261
Cow position: chr5:6153630-6153373 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 26

Conread position: 7-261
Cow position: chr5:76096323-76096580 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 16

Conread position: 8-181
Cow position: chr5:32952164-32952340 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 24

Conread position: 8-259
Cow position: chr5:7810979-7810725 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 25

Conread position: 9-261
Cow position: chr5:10855547-10855291 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 53, 24

Conread position: 9-261
Cow position: chr5:24295888-24296137 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 234, 22

Conread position: 10-250
Cow position: chr5:2459256-2459497 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 25, 158

Conread position: 10-259
Cow position: chr5:12731441-12731190 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 12, 35

Conread position: 10-259
Cow position: chr5:31707836-31708088 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 202

Conread position: 10-260
Cow position: chr5:23831048-23830795 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 27, 162

Conread position: 11-239
Cow position: chr5:24152039-24152271 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 204

Conread position: 11-252
Cow position: chr5:37733619-37733864 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr5:3502838-3502580 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr5:10920109-10920362 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 20

Conread position: 12-255
Cow position: chr5:46737319-46737075 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 62, 19

Conread position: 12-255
Cow position: chr5:50870891-50871126 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 9

Conread position: 12-259
Cow position: chr5:18121212-18120957 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 50, 204

Conread position: 12-259
Cow position: chr5:54620315-54620569 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 25

Conread position: 12-264
Cow position: chr5:18560136-18559878 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 50, 19

Conread position: 13-255
Cow position: chr5:2975066-2975309 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 9, 198

Conread position: 13-261
Cow position: chr5:57816419-57816166 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 21

Conread position: 14-209
Cow position: chr5:46004599-46004402 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 49, 10

Conread position: 14-255
Cow position: chr5:59283589-59283835 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 17

Conread position: 14-261
Cow position: chr5:57481266-57481012 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 17

Conread position: 14-261
Cow position: chr5:64780741-64780487 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 22

Conread position: 15-252
Cow position: chr5:34190187-34190439 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 47, 187

Conread position: 15-252
Cow position: chr5:73487793-73487552 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 16

Conread position: 16-192
Cow position: chr5:49519822-49520005 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 7, 16

Conread position: 16-255
Cow position: chr5:23755203-23754964 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 175

Conread position: 16-259
Cow position: chr5:23230258-23230504 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 46, 86

Conread position: 16-261
Cow position: chr5:24099927-24100176 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 21, 49

Conread position: 17-259
Cow position: chr5:5104492-5104740 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 43, 19

Conread position: 17-259
Cow position: chr5:13046927-13047163 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 17, 46

Conread position: 17-262
Cow position: chr5:41527527-41527270 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 206

Conread position: 19-261
Cow position: chr5:2915712-2915961 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 43, 12

Conread position: 21-243
Cow position: chr5:18665045-18665272 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 195

Conread position: 21-243
Cow position: chr5:46808582-46808810 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 195

Conread position: 23-243
Cow position: chr5:31122305-31122080 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 13

Conread position: 24-243
Cow position: chr5:1340758-1340539 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 14, 25

Conread position: 24-260
Cow position: chr5:46669205-46669458 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 208

Conread position: 24-261
Cow position: chr5:7275115-7275358 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 14, 178

Conread position: 34-227
Cow position: chr5:7227152-7227339 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 82

Conread position: 36-239
Cow position: chr5:45701604-45701812 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 24, 180

Conread position: 36-259
Cow position: chr5:18274049-18274273 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 158

Conread position: 36-259
Cow position: chr5:31100135-31099911 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 69

Conread position: 36-259
Cow position: chr5:37378420-37378651 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 23, 180

Conread position: 36-259
Cow position: chr5:49757413-49757184 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 23, 113

Conread position: 41-259
Cow position: chr5:23686614-23686396 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 173

Conread position: 43-239
Cow position: chr5:15375993-15376188 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 66, 18

Conread position: 44-252
Cow position: chr5:12681742-12681533 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 6

Conread position: 52-255
Cow position: chr5:34697967-34698169 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 57, 22

Conread position: 54-259
Cow position: chr5:54860655-54860450 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 57, 43

Conread position: 63-243
Cow position: chr5:20108228-20108408 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 147

Conread position: 81-251
Cow position: chr5:1228134-1228307 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 133

Conread position: 114-252
Cow position: chr5:12642056-12641920 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 0

Show alignments to all cow chromosomes.