Cow genome map

Conread name: rcut36_b11.y1

Conread position: 1-238
Cow position: chr7:45952123-45952360 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 57

Conread position: 1-258
Cow position: chr7:29368538-29368290 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 152, 30

Conread position: 1-261
Cow position: chr7:46747477-46747744 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 31

Conread position: 2-261
Cow position: chr7:55536438-55536170 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 29

Conread position: 3-217
Cow position: chr7:6647175-6646962 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 105, 36

Conread position: 3-252
Cow position: chr7:58337541-58337303 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 31, 5

Conread position: 4-252
Cow position: chr7:49730969-49731219 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 58, 27

Conread position: 4-257
Cow position: chr7:65872119-65871859 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 24, 28

Conread position: 4-261
Cow position: chr7:24806993-24806731 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 58, 27

Conread position: 6-261
Cow position: chr7:8143483-8143222 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 56, 25

Conread position: 7-240
Cow position: chr7:39132972-39133212 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 56, 15

Conread position: 7-243
Cow position: chr7:14409-14176 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 67, 16

Conread position: 7-243
Cow position: chr7:20514289-20514053 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 16

Conread position: 7-243
Cow position: chr7:43396917-43396678 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 16

Conread position: 7-243
Cow position: chr7:66070629-66070395 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 16

Conread position: 7-252
Cow position: chr7:1609139-1608892 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 55, 14

Conread position: 7-252
Cow position: chr7:62445655-62445408 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr7:7260018-7260265 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 14

Conread position: 7-255
Cow position: chr7:23250117-23250367 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 16

Conread position: 7-255
Cow position: chr7:52763783-52764032 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 204

Conread position: 7-255
Cow position: chr7:55040989-55040739 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 14

Conread position: 7-258
Cow position: chr7:6627907-6627654 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 53, 16

Conread position: 7-258
Cow position: chr7:6629802-6629549 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 53, 16

Conread position: 7-258
Cow position: chr7:27100792-27100539 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 16

Conread position: 7-258
Cow position: chr7:33070913-33070660 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 14

Conread position: 7-259
Cow position: chr7:33311446-33311195 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 75, 16

Conread position: 7-259
Cow position: chr7:51015756-51015992 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 236, 14

Conread position: 7-261
Cow position: chr7:61578995-61579256 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 57, 24

Conread position: 7-261
Cow position: chr7:61809502-61809763 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 24

Conread position: 8-255
Cow position: chr7:49828834-49828589 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 15

Conread position: 8-255
Cow position: chr7:54581353-54581604 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 205

Conread position: 8-260
Cow position: chr7:59685312-59685566 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 102, 34

Conread position: 9-242
Cow position: chr7:64239491-64239258 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 100, 207

Conread position: 9-252
Cow position: chr7:27788453-27788698 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 53, 13

Conread position: 9-252
Cow position: chr7:37021541-37021791 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 27

Conread position: 9-256
Cow position: chr7:21311949-21312193 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 129

Conread position: 9-257
Cow position: chr7:24934056-24933808 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 32

Conread position: 9-261
Cow position: chr7:10429929-10429670 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 22

Conread position: 10-243
Cow position: chr7:48804936-48804701 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 11

Conread position: 10-255
Cow position: chr7:546340-546583 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 12, 96

Conread position: 10-255
Cow position: chr7:5261415-5261175 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 101, 26

Conread position: 11-213
Cow position: chr7:1371148-1370940 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 20

Conread position: 11-243
Cow position: chr7:20557244-20557478 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 49, 12

Conread position: 11-252
Cow position: chr7:13532415-13532169 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 11-255
Cow position: chr7:25441002-25441244 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 20

Conread position: 11-259
Cow position: chr7:11462641-11462386 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 49, 20

Conread position: 11-259
Cow position: chr7:64350991-64351240 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 85

Conread position: 11-261
Cow position: chr7:444761-444504 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr7:3126187-3126444 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr7:14138096-14137839 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr7:34487411-34487668 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr7:45947655-45947397 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 20

Conread position: 11-261
Cow position: chr7:67800321-67800578 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 20

Conread position: 12-179
Cow position: chr7:3299670-3299495 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 12-243
Cow position: chr7:6721639-6721875 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 48, 19

Conread position: 12-243
Cow position: chr7:20060985-20061221 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 144

Conread position: 12-243
Cow position: chr7:54649398-54649635 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 20

Conread position: 12-262
Cow position: chr7:20773839-20773587 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 25

Conread position: 12-295
Cow position: chr7:996244-996524 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 14-261
Cow position: chr7:21986904-21987159 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 48, 17

Conread position: 16-261
Cow position: chr7:18445255-18445001 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 42, 199

Conread position: 16-261
Cow position: chr7:21126175-21125924 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 16

Conread position: 19-257
Cow position: chr7:21233498-21233255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 12

Conread position: 20-238
Cow position: chr7:67430072-67430295 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 43, 16

Conread position: 20-253
Cow position: chr7:34416842-34416602 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 42, 197

Conread position: 20-259
Cow position: chr7:59680354-59680600 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 196

Conread position: 21-261
Cow position: chr7:39793369-39793611 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 23, 40

Conread position: 23-243
Cow position: chr7:8336873-8337098 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 37, 8

Conread position: 24-239
Cow position: chr7:58995078-58995284 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 85, 18

Conread position: 25-261
Cow position: chr7:39097033-39096787 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 75, 194

Conread position: 29-255
Cow position: chr7:60728939-60728710 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 152

Conread position: 36-252
Cow position: chr7:63387253-63387476 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 26, 183

Conread position: 36-259
Cow position: chr7:29471991-29472210 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 26, 12

Conread position: 36-262
Cow position: chr7:3156995-3157230 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 19, 182

Conread position: 36-264
Cow position: chr7:33785786-33786022 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 27, 180

Conread position: 41-259
Cow position: chr7:33333096-33333316 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 170

Conread position: 41-259
Cow position: chr7:42871675-42871895 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 170

Conread position: 42-204
Cow position: chr7:59875968-59876133 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 46-258
Cow position: chr7:40320824-40321018 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 195, 14

Conread position: 50-207
Cow position: chr7:66573453-66573294 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 50-259
Cow position: chr7:67676613-67676824 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 162

Conread position: 52-210
Cow position: chr7:2966062-2966219 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 44

Conread position: 67-230
Cow position: chr7:28664208-28664046 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 28

Conread position: 92-255
Cow position: chr7:526530-526693 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 125

Conread position: 108-256
Cow position: chr7:33067126-33066977 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 47

Conread position: 108-260
Cow position: chr7:949141-949296 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 104

Conread position: 109-243
Cow position: chr7:40201554-40201687 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 109-259
Cow position: chr7:3121599-3121750 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 134, 101

Conread position: 110-261
Cow position: chr7:27711034-27711186 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 133, 100

Conread position: 125-259
Cow position: chr7:541411-541276 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 91

Show alignments to all cow chromosomes.