Cow genome map
| Conread name: | rcut36_b11.y1 |
| Conread position: | 1-259 |
| Cow position: | chr9:44819469-44819728 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 157 |
| Conread position: | 4-259 |
| Cow position: | chr9:17063056-17062794 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 4-259 |
| Cow position: | chr9:54925867-54926127 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 4-261 |
| Cow position: | chr9:7060748-7060472 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 4-262 |
| Cow position: | chr9:28679299-28679557 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 6-261 |
| Cow position: | chr9:28023132-28023394 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 7-242 |
| Cow position: | chr9:2871665-2871905 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 7-242 |
| Cow position: | chr9:50792049-50792288 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr9:10976451-10976689 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr9:25034225-25033987 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-243 |
| Cow position: | chr9:27935716-27935954 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-243 |
| Cow position: | chr9:30828077-30828315 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 7-252 |
| Cow position: | chr9:12913114-12913359 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 7-255 |
| Cow position: | chr9:44384599-44384849 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 7-255 |
| Cow position: | chr9:50093901-50093651 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 7-261 |
| Cow position: | chr9:37969873-37969615 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 8-230 |
| Cow position: | chr9:7158598-7158380 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 197, 34 |
| Conread position: | 8-264 |
| Cow position: | chr9:21410641-21410902 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 9-213 |
| Cow position: | chr9:10937935-10938137 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 9-243 |
| Cow position: | chr9:59537435-59537675 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 9-255 |
| Cow position: | chr9:3309956-3310200 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 9-255 |
| Cow position: | chr9:30673717-30673965 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 9-257 |
| Cow position: | chr9:7004068-7004321 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 9-261 |
| Cow position: | chr9:5005325-5005579 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 100, 207 |
| Conread position: | 10-243 |
| Cow position: | chr9:25903865-25904095 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 98, 117 |
| Conread position: | 10-252 |
| Cow position: | chr9:32970281-32970524 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 10-255 |
| Cow position: | chr9:4942469-4942222 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 10-255 |
| Cow position: | chr9:45874857-45875103 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 10-259 |
| Cow position: | chr9:47043300-47043552 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 12, 201 |
| Conread position: | 11-207 |
| Cow position: | chr9:22654916-22655117 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 11-243 |
| Cow position: | chr9:2212477-2212714 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 11-260 |
| Cow position: | chr9:6250638-6250877 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 11-261 |
| Cow position: | chr9:4533831-4534087 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 11-261 |
| Cow position: | chr9:17304638-17304382 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr9:18508486-18508232 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr9:19158196-19157938 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 11-261 |
| Cow position: | chr9:51180842-51180586 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 12-243 |
| Cow position: | chr9:1074839-1074602 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 48, 201 |
| Conread position: | 12-243 |
| Cow position: | chr9:1250660-1250424 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 12-243 |
| Cow position: | chr9:64015333-64015098 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 12-252 |
| Cow position: | chr9:13474436-13474193 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 12-255 |
| Cow position: | chr9:26567943-26568181 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 15-243 |
| Cow position: | chr9:779479-779248 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 16-222 |
| Cow position: | chr9:29627411-29627197 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 16-261 |
| Cow position: | chr9:37161473-37161220 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 17-228 |
| Cow position: | chr9:1981601-1981819 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 20-253 |
| Cow position: | chr9:64026778-64027017 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 20-255 |
| Cow position: | chr9:38677490-38677730 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 21-251 |
| Cow position: | chr9:26101921-26101697 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 21-255 |
| Cow position: | chr9:2172286-2172528 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 203 |
| Conread position: | 21-261 |
| Cow position: | chr9:27783527-27783779 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 205 |
| Conread position: | 21-261 |
| Cow position: | chr9:31808921-31809169 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 201 |
| Conread position: | 23-243 |
| Cow position: | chr9:31066067-31066292 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 23-253 |
| Cow position: | chr9:22436306-22436536 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 27, 162 |
| Conread position: | 24-261 |
| Cow position: | chr9:17901226-17900983 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 36-252 |
| Cow position: | chr9:827744-827527 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 36-255 |
| Cow position: | chr9:20939672-20939896 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 165 |
| Conread position: | 36-258 |
| Cow position: | chr9:28000882-28001115 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 183 |
| Conread position: | 38-252 |
| Cow position: | chr9:29789325-29789106 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 30, 179 |
| Conread position: | 43-244 |
| Cow position: | chr9:1638229-1638425 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 43-259 |
| Cow position: | chr9:650652-650433 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 50-261 |
| Cow position: | chr9:1995027-1994813 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 8, 167 |
| Conread position: | 58-259 |
| Cow position: | chr9:30300840-30300637 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 158 |
| Conread position: | 77-256 |
| Cow position: | chr9:54681338-54681158 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 89-255 |
| Cow position: | chr9:56303032-56302866 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 121 |
| Conread position: | 101-243 |
| Cow position: | chr9:6709390-6709532 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 108-259 |
| Cow position: | chr9:3804793-3804941 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 74 |
| Conread position: | 108-261 |
| Cow position: | chr9:29026483-29026331 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 85 |
| Conread position: | 114-259 |
| Cow position: | chr9:2000703-2000557 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 94 |
| Conread position: | 114-259 |
| Cow position: | chr9:43665112-43665259 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 97 |
| Conread position: | 126-264 |
| Cow position: | chr9:47004189-47004328 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 89 |
Show alignments to all cow chromosomes.