Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 160-430 |
| Cow position: | chr12:48425862-48425598 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 209 |
| Conread position: | 161-422 |
| Cow position: | chr12:27055754-27055500 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 164-427 |
| Cow position: | chr12:1505164-1504913 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 166-438 |
| Cow position: | chr12:24559505-24559234 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 125, 215 |
| Conread position: | 167-342 |
| Cow position: | chr12:39781195-39781374 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 134, 67 |
| Conread position: | 167-370 |
| Cow position: | chr12:18094036-18093831 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 167-387 |
| Cow position: | chr12:749503-749290 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 74 |
| Conread position: | 167-387 |
| Cow position: | chr12:47486982-47486752 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 167-436 |
| Cow position: | chr12:33458285-33458018 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 119, 63 |
| Conread position: | 167-438 |
| Cow position: | chr12:47804299-47804031 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 171-380 |
| Cow position: | chr12:40715907-40716113 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 171-414 |
| Cow position: | chr12:4583083-4582847 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 171-427 |
| Cow position: | chr12:12331367-12331620 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 173-329 |
| Cow position: | chr12:11080960-11081121 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 173-364 |
| Cow position: | chr12:22689872-22689688 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 173-391 |
| Cow position: | chr12:41642571-41642348 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 125, 97 |
| Conread position: | 173-416 |
| Cow position: | chr12:5658607-5658848 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 193 |
| Conread position: | 173-419 |
| Cow position: | chr12:5680823-5680578 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 173-426 |
| Cow position: | chr12:40931476-40931724 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 173-427 |
| Cow position: | chr12:7996550-7996303 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 93 |
| Conread position: | 173-427 |
| Cow position: | chr12:25619239-25619483 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 114, 68 |
| Conread position: | 173-430 |
| Cow position: | chr12:17109757-17110003 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 173-438 |
| Cow position: | chr12:29691057-29691322 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 173-438 |
| Cow position: | chr12:45225850-45226110 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 174-299 |
| Cow position: | chr12:36109123-36109249 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 174-349 |
| Cow position: | chr12:14855951-14855772 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 174-357 |
| Cow position: | chr12:34242187-34242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 174-370 |
| Cow position: | chr12:7645672-7645865 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 174-377 |
| Cow position: | chr12:34849721-34849918 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 174-377 |
| Cow position: | chr12:34852358-34852555 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 174-380 |
| Cow position: | chr12:30065071-30064867 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 174-381 |
| Cow position: | chr12:5797431-5797630 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 27 |
| Conread position: | 174-385 |
| Cow position: | chr12:42478148-42477933 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 67 |
| Conread position: | 174-426 |
| Cow position: | chr12:25606845-25606593 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 211 |
| Conread position: | 174-436 |
| Cow position: | chr12:42918602-42918349 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 253, 91 |
| Conread position: | 174-438 |
| Cow position: | chr12:18768934-18769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 174-438 |
| Cow position: | chr12:25312237-25312493 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 175-325 |
| Cow position: | chr12:7274568-7274717 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 175-343 |
| Cow position: | chr12:16205861-16205692 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 175-359 |
| Cow position: | chr12:5497692-5497873 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 175-367 |
| Cow position: | chr12:3816624-3816425 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 137 |
| Conread position: | 175-374 |
| Cow position: | chr12:44057654-44057454 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 175-389 |
| Cow position: | chr12:23983801-23983580 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 176-346 |
| Cow position: | chr12:43671838-43671669 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 176-384 |
| Cow position: | chr12:16543442-16543657 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 176-427 |
| Cow position: | chr12:1223212-1223453 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 176-438 |
| Cow position: | chr12:30596605-30596346 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 118, 204 |
| Conread position: | 178-384 |
| Cow position: | chr12:31258141-31257946 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 179-427 |
| Cow position: | chr12:14325141-14325379 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 181-315 |
| Cow position: | chr12:28017177-28017038 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 181-358 |
| Cow position: | chr12:44908147-44907966 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 181-387 |
| Cow position: | chr12:5735278-5735473 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 181-391 |
| Cow position: | chr12:18966625-18966836 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 190 |
| Conread position: | 181-438 |
| Cow position: | chr12:32413646-32413389 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 182-427 |
| Cow position: | chr12:15230690-15230926 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 182-427 |
| Cow position: | chr12:21829201-21828977 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 183-357 |
| Cow position: | chr12:25933812-25933635 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 109, 42 |
| Conread position: | 184-384 |
| Cow position: | chr12:245587-245769 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 192-384 |
| Cow position: | chr12:31528735-31528932 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 192-427 |
| Cow position: | chr12:28559422-28559186 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 193-426 |
| Cow position: | chr12:27038623-27038865 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 98, 116 |
| Conread position: | 197-357 |
| Cow position: | chr12:45541823-45541662 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 200-380 |
| Cow position: | chr12:17262964-17262783 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 98, 117 |
| Conread position: | 201-371 |
| Cow position: | chr12:13657632-13657808 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 201-434 |
| Cow position: | chr12:24204201-24204427 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 117 |
| Conread position: | 214-422 |
| Cow position: | chr12:31198866-31198659 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 166 |
| Conread position: | 223-345 |
| Cow position: | chr12:39754372-39754249 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 256-437 |
| Cow position: | chr12:38484337-38484514 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 60 |
Show alignments to all cow chromosomes.