Cow genome map

Conread name: rdbla0112_h19.y1

Conread position: 133-377
Cow position: chr17:728102-728344 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 44

Conread position: 152-289
Cow position: chr17:25144850-25144984 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 154-425
Cow position: chr17:33386660-33386385 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 20, 89

Conread position: 157-427
Cow position: chr17:36216952-36217212 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 135, 79

Conread position: 160-367
Cow position: chr17:34870312-34870099 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 7

Conread position: 160-427
Cow position: chr17:2271227-2270966 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 41

Conread position: 160-427
Cow position: chr17:5787606-5787866 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 44, 82

Conread position: 163-391
Cow position: chr17:13229605-13229374 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 39, 107

Conread position: 166-293
Cow position: chr17:37342066-37342194 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 111, 0

Conread position: 166-373
Cow position: chr17:10314646-10314434 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 130, 0

Conread position: 166-422
Cow position: chr17:8831918-8832151 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 129, 0

Conread position: 166-427
Cow position: chr17:1455718-1455970 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 47, 12

Conread position: 166-427
Cow position: chr17:37414678-37414926 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 160, 40

Conread position: 167-293
Cow position: chr17:42775044-42775170 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 167-334
Cow position: chr17:33925793-33925966 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 88

Conread position: 167-373
Cow position: chr17:27505320-27505110 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 128, 0

Conread position: 167-374
Cow position: chr17:36173743-36173960 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 37

Conread position: 167-376
Cow position: chr17:10769286-10769501 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 97, 86

Conread position: 167-427
Cow position: chr17:3042701-3042443 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 79

Conread position: 167-427
Cow position: chr17:32457347-32457599 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 39

Conread position: 167-429
Cow position: chr17:18246289-18246045 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 118

Conread position: 167-438
Cow position: chr17:8279491-8279752 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 137, 36

Conread position: 167-438
Cow position: chr17:27819515-27819259 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 115, 36

Conread position: 171-261
Cow position: chr17:33154388-33154298 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 80
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 171-299
Cow position: chr17:3467187-3467058 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 171-366
Cow position: chr17:9059917-9060125 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 54, 158

Conread position: 171-383
Cow position: chr17:23147638-23147423 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 115, 46

Conread position: 171-427
Cow position: chr17:10271703-10271465 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 116, 34

Conread position: 171-438
Cow position: chr17:37138973-37138720 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 121, 36

Conread position: 172-435
Cow position: chr17:6569929-6570178 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 78, 27

Conread position: 172-438
Cow position: chr17:24580077-24580340 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 7

Conread position: 173-301
Cow position: chr17:7861484-7861612 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 173-338
Cow position: chr17:8615630-8615789 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 128, 33

Conread position: 173-367
Cow position: chr17:11655596-11655395 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 114, 0

Conread position: 173-373
Cow position: chr17:3619869-3620072 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 113, 68

Conread position: 173-377
Cow position: chr17:35107416-35107209 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 173-424
Cow position: chr17:18173613-18173848 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 92, 0

Conread position: 173-426
Cow position: chr17:37778417-37778649 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 33, 0

Conread position: 173-427
Cow position: chr17:7614159-7614413 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 119, 210

Conread position: 173-427
Cow position: chr17:11344423-11344186 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 114, 43

Conread position: 173-427
Cow position: chr17:24880958-24880710 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 114, 159

Conread position: 173-427
Cow position: chr17:26162208-26162457 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 101, 60

Conread position: 173-438
Cow position: chr17:4140680-4140925 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 173-438
Cow position: chr17:10424275-10424037 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 122, 0

Conread position: 174-290
Cow position: chr17:6559071-6558955 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 174-301
Cow position: chr17:40244131-40244004 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 174-334
Cow position: chr17:7163676-7163843 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 174-339
Cow position: chr17:43284862-43284693 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 53

Conread position: 174-350
Cow position: chr17:19239663-19239843 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 117, 72

Conread position: 174-359
Cow position: chr17:15923054-15922869 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 124, 67

Conread position: 174-359
Cow position: chr17:34627628-34627818 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 90

Conread position: 174-371
Cow position: chr17:14278280-14278077 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 118, 0

Conread position: 174-377
Cow position: chr17:15634669-15634872 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 32

Conread position: 174-381
Cow position: chr17:31798232-31798444 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 117, 0

Conread position: 174-389
Cow position: chr17:35387784-35388003 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 113, 24

Conread position: 174-414
Cow position: chr17:38139725-38139488 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 48

Conread position: 174-415
Cow position: chr17:26614517-26614751 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 66, 33

Conread position: 174-427
Cow position: chr17:143963-144209 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 174-427
Cow position: chr17:33903707-33903952 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 47, 32

Conread position: 174-438
Cow position: chr17:27257001-27257275 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 115, 213

Conread position: 174-438
Cow position: chr17:31465024-31465295 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 139, 67

Conread position: 175-374
Cow position: chr17:30236406-30236209 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 164
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 125, 22

Conread position: 175-420
Cow position: chr17:7205635-7205394 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 73, 33

Conread position: 175-427
Cow position: chr17:23803671-23803428 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 51

Conread position: 175-427
Cow position: chr17:36400313-36400067 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 120, 31

Conread position: 175-438
Cow position: chr17:39016313-39016051 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 129, 29

Conread position: 179-338
Cow position: chr17:18829689-18829520 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 179-384
Cow position: chr17:10221061-10220854 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 88

Conread position: 180-403
Cow position: chr17:1328808-1328581 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 121, 31

Conread position: 180-427
Cow position: chr17:20216378-20216135 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 121, 189

Conread position: 180-430
Cow position: chr17:5360242-5360473 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 92, 0

Conread position: 181-355
Cow position: chr17:5381161-5380989 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 105, 74

Conread position: 181-377
Cow position: chr17:40855066-40854864 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 57, 147

Conread position: 181-412
Cow position: chr17:36818246-36818019 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 110, 61

Conread position: 181-427
Cow position: chr17:13715825-13716069 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 110, 42

Conread position: 182-329
Cow position: chr17:11826248-11826396 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 131, 121

Conread position: 184-425
Cow position: chr17:35212563-35212338 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 0

Conread position: 186-334
Cow position: chr17:5041201-5041354 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 187-438
Cow position: chr17:39012922-39012682 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 115, 66

Conread position: 190-370
Cow position: chr17:23318119-23318300 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 52

Conread position: 192-386
Cow position: chr17:33913375-33913576 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 193-301
Cow position: chr17:33930357-33930249 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 196-422
Cow position: chr17:28360030-28359814 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 102, 45

Conread position: 196-438
Cow position: chr17:19891819-19891578 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 93, 45

Conread position: 197-342
Cow position: chr17:8215385-8215236 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 94, 44

Conread position: 197-422
Cow position: chr17:9748938-9748719 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 46, 171

Conread position: 198-427
Cow position: chr17:4085948-4085725 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 56, 43

Conread position: 203-377
Cow position: chr17:7595338-7595164 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 95, 114

Conread position: 204-328
Cow position: chr17:23879339-23879468 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 204-338
Cow position: chr17:27781253-27781119 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 113

Conread position: 206-427
Cow position: chr17:21373859-21373647 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 92, 59

Conread position: 208-422
Cow position: chr17:18568755-18568959 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 86, 17

Conread position: 208-427
Cow position: chr17:11171970-11171762 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 42

Conread position: 213-438
Cow position: chr17:8926039-8926259 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 26, 35

Conread position: 223-438
Cow position: chr17:25180982-25181187 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 75, 43

Conread position: 226-430
Cow position: chr17:25708121-25707923 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 27, 35

Conread position: 228-430
Cow position: chr17:34864731-34864540 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 38

Conread position: 233-427
Cow position: chr17:5296699-5296888 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 135

Conread position: 233-427
Cow position: chr17:5985914-5986103 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 135

Conread position: 235-427
Cow position: chr17:10307877-10308058 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 62, 67

Conread position: 237-427
Cow position: chr17:10015797-10015980 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 66, 51

Conread position: 246-426
Cow position: chr17:8293635-8293813 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 129

Show alignments to all cow chromosomes.