Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 160-359 |
| Cow position: | chr18:30566404-30566601 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 156, 30 |
| Conread position: | 160-363 |
| Cow position: | chr18:51537530-51537731 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 63 |
| Conread position: | 160-438 |
| Cow position: | chr18:32909200-32908931 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 161-364 |
| Cow position: | chr18:48458827-48458623 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 161-426 |
| Cow position: | chr18:51298636-51298376 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 142, 110 |
| Conread position: | 162-387 |
| Cow position: | chr18:5756136-5755907 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 164-342 |
| Cow position: | chr18:48036971-48036789 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 164-427 |
| Cow position: | chr18:19364086-19363831 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 77 |
| Conread position: | 164-438 |
| Cow position: | chr18:29796276-29796542 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 165-287 |
| Cow position: | chr18:33248357-33248235 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-359 |
| Cow position: | chr18:7409152-7409344 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 39 |
| Conread position: | 166-372 |
| Cow position: | chr18:39503549-39503750 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 128, 99 |
| Conread position: | 166-373 |
| Cow position: | chr18:45961121-45961332 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 123, 56 |
| Conread position: | 166-438 |
| Cow position: | chr18:34324798-34325070 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 157 |
| Conread position: | 167-293 |
| Cow position: | chr18:28794986-28794862 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 167-377 |
| Cow position: | chr18:33842934-33843150 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 167-427 |
| Cow position: | chr18:16841901-16842167 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 167-427 |
| Cow position: | chr18:37331378-37331631 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 151 |
| Conread position: | 167-431 |
| Cow position: | chr18:46320833-46321087 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 169-426 |
| Cow position: | chr18:51486319-51486567 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 129, 37 |
| Conread position: | 171-285 |
| Cow position: | chr18:15267843-15267957 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-427 |
| Cow position: | chr18:6158055-6157810 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 171-427 |
| Cow position: | chr18:40893420-40893171 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 116, 160 |
| Conread position: | 171-436 |
| Cow position: | chr18:30586071-30586336 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 199 |
| Conread position: | 173-339 |
| Cow position: | chr18:48717801-48717964 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 173-365 |
| Cow position: | chr18:26373065-26372868 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 173-373 |
| Cow position: | chr18:35767313-35767114 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 173-380 |
| Cow position: | chr18:46873724-46873928 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 173-389 |
| Cow position: | chr18:55696883-55697096 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 31 |
| Conread position: | 173-391 |
| Cow position: | chr18:11362394-11362176 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 130, 200 |
| Conread position: | 173-391 |
| Cow position: | chr18:38126305-38126526 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 89 |
| Conread position: | 173-424 |
| Cow position: | chr18:10101630-10101389 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 173-427 |
| Cow position: | chr18:15831458-15831697 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 173-427 |
| Cow position: | chr18:23714726-23714991 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 212 |
| Conread position: | 173-427 |
| Cow position: | chr18:26334661-26334917 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 173-431 |
| Cow position: | chr18:9155034-9154774 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 200 |
| Conread position: | 173-431 |
| Cow position: | chr18:43712191-43711931 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 74 |
| Conread position: | 173-438 |
| Cow position: | chr18:51271600-51271868 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 207 |
| Conread position: | 174-301 |
| Cow position: | chr18:51241169-51241042 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 61 |
| Conread position: | 174-325 |
| Cow position: | chr18:29949888-29949737 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 174-370 |
| Cow position: | chr18:4578344-4578543 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 174-377 |
| Cow position: | chr18:44493342-44493544 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 116, 157 |
| Conread position: | 174-408 |
| Cow position: | chr18:50700828-50700593 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 121, 91 |
| Conread position: | 174-412 |
| Cow position: | chr18:2438623-2438855 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 174-415 |
| Cow position: | chr18:1190578-1190813 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 126, 178 |
| Conread position: | 174-426 |
| Cow position: | chr18:40202667-40202911 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 132, 92 |
| Conread position: | 174-427 |
| Cow position: | chr18:16448682-16448451 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 174-427 |
| Cow position: | chr18:20126964-20127211 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 174-427 |
| Cow position: | chr18:35797754-35797520 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 174-438 |
| Cow position: | chr18:22411468-22411732 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 113, 67 |
| Conread position: | 175-339 |
| Cow position: | chr18:24221711-24221548 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 175-427 |
| Cow position: | chr18:248672-248918 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 112, 172 |
| Conread position: | 175-427 |
| Cow position: | chr18:23488172-23487922 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 175-438 |
| Cow position: | chr18:51587405-51587661 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 176-382 |
| Cow position: | chr18:4040310-4040107 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 179-373 |
| Cow position: | chr18:24363924-24364117 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 180-324 |
| Cow position: | chr18:4378903-4378756 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 181-426 |
| Cow position: | chr18:716509-716274 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 182-299 |
| Cow position: | chr18:35608061-35607944 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-431 |
| Cow position: | chr18:42061209-42060967 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 186-425 |
| Cow position: | chr18:9713548-9713324 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 187-386 |
| Cow position: | chr18:43113818-43114015 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 111, 62 |
| Conread position: | 192-438 |
| Cow position: | chr18:24855718-24855962 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 109, 164 |
| Conread position: | 194-438 |
| Cow position: | chr18:21706060-21706296 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 145 |
| Conread position: | 197-384 |
| Cow position: | chr18:44400567-44400379 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 197-424 |
| Cow position: | chr18:25970521-25970736 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 197-438 |
| Cow position: | chr18:16726769-16726531 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 95, 136 |
| Conread position: | 198-334 |
| Cow position: | chr18:21094985-21095126 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 200-364 |
| Cow position: | chr18:10687476-10687648 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 201-420 |
| Cow position: | chr18:15689403-15689187 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 149 |
| Conread position: | 207-431 |
| Cow position: | chr18:39210903-39211144 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 158 |
| Conread position: | 210-373 |
| Cow position: | chr18:33275397-33275235 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 97 |
| Conread position: | 211-427 |
| Cow position: | chr18:16134207-16134423 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 211-438 |
| Cow position: | chr18:23425025-23424802 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 140 |
| Conread position: | 212-438 |
| Cow position: | chr18:32773984-32773759 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 217-377 |
| Cow position: | chr18:25002789-25002955 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 233-427 |
| Cow position: | chr18:32517268-32517460 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 243-425 |
| Cow position: | chr18:213462-213642 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 136 |
| Conread position: | 244-426 |
| Cow position: | chr18:21681899-21682085 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 249-438 |
| Cow position: | chr18:38793818-38794000 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 253-436 |
| Cow position: | chr18:19387637-19387461 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 253-438 |
| Cow position: | chr18:21176252-21176070 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 70 |
Show alignments to all cow chromosomes.