Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 155-427 |
| Cow position: | chr19:31984465-31984734 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 146, 37 |
| Conread position: | 158-345 |
| Cow position: | chr19:47783582-47783776 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 159-426 |
| Cow position: | chr19:21284900-21285156 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 112, 210 |
| Conread position: | 160-346 |
| Cow position: | chr19:46498109-46497926 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 160-359 |
| Cow position: | chr19:9092630-9092834 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 162-427 |
| Cow position: | chr19:39250434-39250185 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 141, 37 |
| Conread position: | 165-438 |
| Cow position: | chr19:25271246-25271511 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 166-438 |
| Cow position: | chr19:32214971-32214703 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 166-438 |
| Cow position: | chr19:43727306-43727044 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 141, 74 |
| Conread position: | 167-271 |
| Cow position: | chr19:42646688-42646792 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-293 |
| Cow position: | chr19:41459368-41459242 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-386 |
| Cow position: | chr19:19246942-19246723 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 167-427 |
| Cow position: | chr19:905139-904895 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 167-427 |
| Cow position: | chr19:48479147-48478896 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 167-430 |
| Cow position: | chr19:28842187-28842456 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 167-438 |
| Cow position: | chr19:27346491-27346744 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 167-438 |
| Cow position: | chr19:31614280-31614017 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 171-421 |
| Cow position: | chr19:24721844-24721600 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 74 |
| Conread position: | 171-436 |
| Cow position: | chr19:1153375-1153119 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 133 |
| Conread position: | 171-436 |
| Cow position: | chr19:15936999-15936743 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 171-438 |
| Cow position: | chr19:20291924-20292185 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 132, 63 |
| Conread position: | 172-370 |
| Cow position: | chr19:14254565-14254763 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 145, 63 |
| Conread position: | 172-384 |
| Cow position: | chr19:4824814-4825030 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 115, 174 |
| Conread position: | 173-348 |
| Cow position: | chr19:22932382-22932562 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 173-366 |
| Cow position: | chr19:26003447-26003647 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 173-412 |
| Cow position: | chr19:30935603-30935854 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 173-438 |
| Cow position: | chr19:33686250-33685992 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 174-299 |
| Cow position: | chr19:38708319-38708191 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 174-362 |
| Cow position: | chr19:2280481-2280667 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 121, 32 |
| Conread position: | 174-378 |
| Cow position: | chr19:5648506-5648708 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 174-387 |
| Cow position: | chr19:952854-952642 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 129, 75 |
| Conread position: | 174-388 |
| Cow position: | chr19:12040784-12040571 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 113, 161 |
| Conread position: | 174-416 |
| Cow position: | chr19:31126963-31126723 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 117, 194 |
| Conread position: | 174-427 |
| Cow position: | chr19:2342642-2342399 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 174-427 |
| Cow position: | chr19:11759063-11759331 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 113, 207 |
| Conread position: | 174-438 |
| Cow position: | chr19:9387800-9387540 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 115, 180 |
| Conread position: | 174-438 |
| Cow position: | chr19:31380841-31381088 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 174-438 |
| Cow position: | chr19:36976746-36977009 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 176 |
| Conread position: | 174-438 |
| Cow position: | chr19:38907196-38907451 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 175-338 |
| Cow position: | chr19:11147460-11147621 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 175-338 |
| Cow position: | chr19:39222946-39223106 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 175-417 |
| Cow position: | chr19:38871233-38870982 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 175-427 |
| Cow position: | chr19:2770853-2771095 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 175-438 |
| Cow position: | chr19:11876538-11876798 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 176-338 |
| Cow position: | chr19:38025857-38025689 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 176-418 |
| Cow position: | chr19:24689440-24689204 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 5 |
| Conread position: | 179-437 |
| Cow position: | chr19:1712980-1713237 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 179-438 |
| Cow position: | chr19:35345089-35344829 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 107, 196 |
| Conread position: | 181-422 |
| Cow position: | chr19:7030076-7029838 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 181-424 |
| Cow position: | chr19:33882030-33882250 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 106, 76 |
| Conread position: | 182-377 |
| Cow position: | chr19:11636788-11636980 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 134, 39 |
| Conread position: | 182-427 |
| Cow position: | chr19:36461371-36461614 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 182-436 |
| Cow position: | chr19:54225154-54225399 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 182-437 |
| Cow position: | chr19:55236643-55236396 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 135 |
| Conread position: | 182-438 |
| Cow position: | chr19:19662195-19661950 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 182-438 |
| Cow position: | chr19:31827247-31827005 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 185-427 |
| Cow position: | chr19:53738488-53738253 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 112, 56 |
| Conread position: | 187-338 |
| Cow position: | chr19:5986388-5986231 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 190-427 |
| Cow position: | chr19:7838899-7839124 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 191-425 |
| Cow position: | chr19:6735076-6735310 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 189 |
| Conread position: | 192-377 |
| Cow position: | chr19:50658286-50658098 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 201-331 |
| Cow position: | chr19:46306202-46306334 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 205-381 |
| Cow position: | chr19:35064057-35064240 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 207-438 |
| Cow position: | chr19:3123924-3124155 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 211-378 |
| Cow position: | chr19:36318434-36318266 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 217-427 |
| Cow position: | chr19:2821705-2821499 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 220-391 |
| Cow position: | chr19:9100266-9100090 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 223-374 |
| Cow position: | chr19:21091211-21091059 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 95 |
| Conread position: | 225-391 |
| Cow position: | chr19:3080577-3080406 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 226-384 |
| Cow position: | chr19:51800462-51800620 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 147 |
| Conread position: | 233-384 |
| Cow position: | chr19:33261128-33260977 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 233-427 |
| Cow position: | chr19:19673510-19673331 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 240-427 |
| Cow position: | chr19:19924505-19924682 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 247-427 |
| Cow position: | chr19:10207702-10207526 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 249-436 |
| Cow position: | chr19:16110096-16110292 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 304-418 |
| Cow position: | chr19:4998457-4998345 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.