Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 152-384 |
| Cow position: | chr20:9706679-9706916 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 139, 5 |
| Conread position: | 160-371 |
| Cow position: | chr20:38858203-38858402 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 160-373 |
| Cow position: | chr20:17363425-17363640 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 130, 160 |
| Conread position: | 160-427 |
| Cow position: | chr20:10759241-10759504 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 160-427 |
| Cow position: | chr20:23235264-23235007 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 141, 175 |
| Conread position: | 161-438 |
| Cow position: | chr20:27001615-27001351 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 162-374 |
| Cow position: | chr20:4334288-4334516 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 163-380 |
| Cow position: | chr20:4933839-4934060 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 163-382 |
| Cow position: | chr20:220839-220622 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 163-386 |
| Cow position: | chr20:16979981-16979750 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 167-293 |
| Cow position: | chr20:8556620-8556746 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-374 |
| Cow position: | chr20:7386777-7386574 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 167-423 |
| Cow position: | chr20:8262140-8261884 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 167-427 |
| Cow position: | chr20:19266373-19266126 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 167-436 |
| Cow position: | chr20:26749988-26750246 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 125, 52 |
| Conread position: | 171-311 |
| Cow position: | chr20:922207-922067 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 172-426 |
| Cow position: | chr20:26880681-26880937 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 172-427 |
| Cow position: | chr20:19339662-19339901 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 173-292 |
| Cow position: | chr20:1478760-1478640 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 173-300 |
| Cow position: | chr20:2801647-2801773 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 173-348 |
| Cow position: | chr20:33962950-33962783 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 173-378 |
| Cow position: | chr20:4157636-4157433 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 173-382 |
| Cow position: | chr20:25823497-25823285 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 118, 149 |
| Conread position: | 173-385 |
| Cow position: | chr20:13608850-13609061 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 173-426 |
| Cow position: | chr20:35842908-35843155 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 173-427 |
| Cow position: | chr20:7101006-7100748 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 98, 200 |
| Conread position: | 173-427 |
| Cow position: | chr20:10837995-10838244 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 173-427 |
| Cow position: | chr20:30855539-30855782 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 173-438 |
| Cow position: | chr20:24643929-24644188 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 174-293 |
| Cow position: | chr20:37136306-37136186 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 174-342 |
| Cow position: | chr20:21518863-21518696 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 174-347 |
| Cow position: | chr20:6104933-6105114 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 174-348 |
| Cow position: | chr20:32972765-32972591 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 51 |
| Conread position: | 174-358 |
| Cow position: | chr20:14471347-14471541 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 174-359 |
| Cow position: | chr20:311541-311355 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 174-359 |
| Cow position: | chr20:25146997-25146812 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 118, 27 |
| Conread position: | 174-372 |
| Cow position: | chr20:29750595-29750783 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 174-373 |
| Cow position: | chr20:35924568-35924765 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 174-377 |
| Cow position: | chr20:41109878-41110084 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 98 |
| Conread position: | 174-420 |
| Cow position: | chr20:5763075-5763318 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 124, 41 |
| Conread position: | 174-422 |
| Cow position: | chr20:24234363-24234132 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 174-436 |
| Cow position: | chr20:13465725-13465472 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 174-438 |
| Cow position: | chr20:20359564-20359826 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 175-427 |
| Cow position: | chr20:14679835-14679592 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 66 |
| Conread position: | 175-438 |
| Cow position: | chr20:6903531-6903275 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 176-374 |
| Cow position: | chr20:2456243-2456046 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 176-380 |
| Cow position: | chr20:23163688-23163892 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 176-438 |
| Cow position: | chr20:25686130-25686390 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 110, 174 |
| Conread position: | 179-349 |
| Cow position: | chr20:2430753-2430583 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 130 |
| Conread position: | 179-402 |
| Cow position: | chr20:18530649-18530422 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 180-343 |
| Cow position: | chr20:32587569-32587408 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 180-374 |
| Cow position: | chr20:15241550-15241750 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 180-427 |
| Cow position: | chr20:33178313-33178549 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 181-324 |
| Cow position: | chr20:3105228-3105089 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 181-430 |
| Cow position: | chr20:4204498-4204260 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 87 |
| Conread position: | 181-438 |
| Cow position: | chr20:17397052-17397298 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 181-438 |
| Cow position: | chr20:42255071-42254817 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 114, 53 |
| Conread position: | 184-427 |
| Cow position: | chr20:1205728-1205961 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 184-431 |
| Cow position: | chr20:39656452-39656215 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 187-381 |
| Cow position: | chr20:32668175-32667978 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 191-438 |
| Cow position: | chr20:32861801-32862038 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 192-437 |
| Cow position: | chr20:19865449-19865213 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 109, 127 |
| Conread position: | 195-427 |
| Cow position: | chr20:15073633-15073864 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 197-427 |
| Cow position: | chr20:25274096-25274318 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 155 |
| Conread position: | 197-436 |
| Cow position: | chr20:17670379-17670141 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 200-340 |
| Cow position: | chr20:35683212-35683353 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 117, 103 |
| Conread position: | 201-358 |
| Cow position: | chr20:21236845-21236687 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 205-427 |
| Cow position: | chr20:14362959-14363166 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 209-427 |
| Cow position: | chr20:40355306-40355091 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 220-438 |
| Cow position: | chr20:23834288-23834089 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 231-349 |
| Cow position: | chr20:37450712-37450589 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 256-425 |
| Cow position: | chr20:5576913-5576746 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 257-438 |
| Cow position: | chr20:20471920-20471740 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 267-381 |
| Cow position: | chr20:38124014-38123893 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.