Cow genome map

Conread name: rdbla0112_h19.y1

Conread position: 138-438
Cow position: chr21:37235658-37235364 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 136, 51

Conread position: 158-438
Cow position: chr21:36371737-36371465 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 140, 48

Conread position: 161-438
Cow position: chr21:32574975-32574702 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 126

Conread position: 162-437
Cow position: chr21:13737299-13737034 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 129, 73

Conread position: 163-436
Cow position: chr21:4723732-4723461 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 218

Conread position: 164-329
Cow position: chr21:6696767-6696938 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 164-370
Cow position: chr21:13417989-13418191 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 152, 39

Conread position: 164-427
Cow position: chr21:9353698-9353436 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 202

Conread position: 164-427
Cow position: chr21:39509139-39509397 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 137, 83

Conread position: 164-436
Cow position: chr21:18941584-18941851 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 125, 115

Conread position: 167-323
Cow position: chr21:44220613-44220449 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 167-380
Cow position: chr21:31004427-31004642 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 152

Conread position: 167-391
Cow position: chr21:17428743-17428518 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 120, 104

Conread position: 167-420
Cow position: chr21:11675806-11676053 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 131, 150

Conread position: 167-427
Cow position: chr21:6316457-6316207 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 131, 30

Conread position: 167-427
Cow position: chr21:37120965-37121242 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 131, 80

Conread position: 167-437
Cow position: chr21:3254399-3254131 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 119, 201

Conread position: 167-438
Cow position: chr21:15741837-15742112 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 120, 203

Conread position: 167-438
Cow position: chr21:21140755-21140505 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 29, 103

Conread position: 167-438
Cow position: chr21:31662246-31661984 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 34

Conread position: 171-315
Cow position: chr21:23974033-23974181 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 121, 70

Conread position: 171-317
Cow position: chr21:44094006-44093856 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 106

Conread position: 171-421
Cow position: chr21:31576731-31576493 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 119, 25

Conread position: 171-427
Cow position: chr21:34564976-34565220 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 32, 0

Conread position: 171-427
Cow position: chr21:34740088-34739834 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 115, 207

Conread position: 171-427
Cow position: chr21:48290815-48291062 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 132, 54

Conread position: 172-293
Cow position: chr21:30053178-30053298 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 172-436
Cow position: chr21:21223523-21223268 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 114, 59

Conread position: 173-336
Cow position: chr21:26147319-26147151 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 113, 153

Conread position: 173-359
Cow position: chr21:27480685-27480499 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 89, 35

Conread position: 173-373
Cow position: chr21:45356075-45355871 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 113, 193

Conread position: 173-379
Cow position: chr21:47715304-47715516 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 69, 62

Conread position: 173-438
Cow position: chr21:25286755-25286493 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 125, 93

Conread position: 174-345
Cow position: chr21:23397425-23397598 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 174-346
Cow position: chr21:17806899-17807070 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 32

Conread position: 174-354
Cow position: chr21:4276363-4276547 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 97

Conread position: 174-364
Cow position: chr21:8282503-8282321 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 138, 0

Conread position: 174-377
Cow position: chr21:7483115-7483317 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 118, 18

Conread position: 174-422
Cow position: chr21:18379083-18378828 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 158

Conread position: 174-424
Cow position: chr21:4099106-4098865 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 141, 32

Conread position: 174-425
Cow position: chr21:12301271-12301522 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 112, 61

Conread position: 174-427
Cow position: chr21:6058409-6058649 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 142, 32

Conread position: 174-427
Cow position: chr21:15239517-15239275 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 120, 32

Conread position: 174-427
Cow position: chr21:23397612-23397856 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 124, 32

Conread position: 174-427
Cow position: chr21:44754549-44754787 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 106, 0

Conread position: 174-436
Cow position: chr21:46607353-46607609 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 112, 91

Conread position: 174-438
Cow position: chr21:31662706-31662444 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 113, 12

Conread position: 174-438
Cow position: chr21:33947015-33947271 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 143, 36

Conread position: 175-377
Cow position: chr21:8671630-8671429 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 128, 58

Conread position: 175-426
Cow position: chr21:47823024-47823283 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 28, 62

Conread position: 175-438
Cow position: chr21:21181416-21181156 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 129, 82

Conread position: 175-438
Cow position: chr21:49649855-49649610 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 121, 29

Conread position: 176-357
Cow position: chr21:49654306-49654122 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 87, 65

Conread position: 176-427
Cow position: chr21:8207014-8206760 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 89

Conread position: 179-373
Cow position: chr21:24674951-24674757 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 136, 184

Conread position: 179-427
Cow position: chr21:46242005-46242245 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 122, 155

Conread position: 179-438
Cow position: chr21:9939954-9940211 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 107, 76

Conread position: 179-438
Cow position: chr21:41515029-41514783 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 229, 116

Conread position: 181-436
Cow position: chr21:12087829-12087572 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 103, 167

Conread position: 182-377
Cow position: chr21:19859938-19860135 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 116, 24

Conread position: 182-427
Cow position: chr21:30150011-30150273 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 116, 59

Conread position: 184-299
Cow position: chr21:33714357-33714244 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 190-341
Cow position: chr21:18782455-18782306 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 45

Conread position: 190-427
Cow position: chr21:37718227-37718452 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 117, 16

Conread position: 191-427
Cow position: chr21:35997395-35997166 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 112, 159

Conread position: 196-384
Cow position: chr21:26753709-26753516 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 91, 30

Conread position: 202-391
Cow position: chr21:23768082-23767890 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 90, 39

Conread position: 202-438
Cow position: chr21:23786243-23786009 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 94, 39

Conread position: 205-302
Cow position: chr21:47774241-47774338 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 222-437
Cow position: chr21:24698673-24698460 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 76, 141

Conread position: 232-430
Cow position: chr21:1885608-1885803 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 139

Conread position: 233-438
Cow position: chr21:28993450-28993642 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 194, 8

Conread position: 290-426
Cow position: chr21:38774308-38774178 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 17

Show alignments to all cow chromosomes.