Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 142-377 |
| Cow position: | chr23:8929931-8930165 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 156, 37 |
| Conread position: | 160-279 |
| Cow position: | chr23:24397615-24397732 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 160-418 |
| Cow position: | chr23:14840322-14840574 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 160-438 |
| Cow position: | chr23:16237073-16237334 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 161-427 |
| Cow position: | chr23:18326995-18326737 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 125, 14 |
| Conread position: | 162-299 |
| Cow position: | chr23:19981494-19981630 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 162-435 |
| Cow position: | chr23:16793771-16793508 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 136, 44 |
| Conread position: | 167-353 |
| Cow position: | chr23:11564193-11564377 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 94 |
| Conread position: | 167-374 |
| Cow position: | chr23:28721052-28721259 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 124, 97 |
| Conread position: | 167-388 |
| Cow position: | chr23:7611445-7611230 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 128, 39 |
| Conread position: | 167-412 |
| Cow position: | chr23:5389885-5389644 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 123, 201 |
| Conread position: | 167-427 |
| Cow position: | chr23:22660403-22660650 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 120, 98 |
| Conread position: | 171-286 |
| Cow position: | chr23:40492921-40492807 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 171-299 |
| Cow position: | chr23:18967706-18967834 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-358 |
| Cow position: | chr23:4956201-4956015 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 171-374 |
| Cow position: | chr23:9812056-9812248 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 119, 94 |
| Conread position: | 171-416 |
| Cow position: | chr23:16058765-16058534 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 171-438 |
| Cow position: | chr23:791854-792114 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 134, 44 |
| Conread position: | 172-362 |
| Cow position: | chr23:22272296-22272493 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 172-426 |
| Cow position: | chr23:21275838-21276091 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 172-427 |
| Cow position: | chr23:11750953-11751200 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 172-427 |
| Cow position: | chr23:35177502-35177248 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 171 |
| Conread position: | 173-291 |
| Cow position: | chr23:26067271-26067155 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 173-299 |
| Cow position: | chr23:30735970-30736093 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 173-377 |
| Cow position: | chr23:28701167-28700956 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 173-395 |
| Cow position: | chr23:13360006-13359780 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 173-408 |
| Cow position: | chr23:36082765-36082530 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 121, 185 |
| Conread position: | 173-427 |
| Cow position: | chr23:20171761-20171507 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 110, 203 |
| Conread position: | 173-427 |
| Cow position: | chr23:20585521-20585768 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 197 |
| Conread position: | 173-427 |
| Cow position: | chr23:26217735-26217493 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 142, 29 |
| Conread position: | 173-430 |
| Cow position: | chr23:35155554-35155298 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 114, 187 |
| Conread position: | 173-436 |
| Cow position: | chr23:40891543-40891279 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 200 |
| Conread position: | 173-438 |
| Cow position: | chr23:23191984-23192233 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 254, 27 |
| Conread position: | 174-365 |
| Cow position: | chr23:38941800-38941605 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 88 |
| Conread position: | 174-384 |
| Cow position: | chr23:26861611-26861406 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 174-424 |
| Cow position: | chr23:14126742-14126501 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 174-427 |
| Cow position: | chr23:26051218-26050966 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 174-427 |
| Cow position: | chr23:29272289-29272045 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 174-427 |
| Cow position: | chr23:30773522-30773747 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 174-438 |
| Cow position: | chr23:19636083-19636343 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 175-320 |
| Cow position: | chr23:1551055-1550905 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 175-345 |
| Cow position: | chr23:347571-347742 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 123, 74 |
| Conread position: | 175-380 |
| Cow position: | chr23:6683922-6683717 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 175-387 |
| Cow position: | chr23:21866919-21866703 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 175-388 |
| Cow position: | chr23:1717371-1717588 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 115, 209 |
| Conread position: | 175-436 |
| Cow position: | chr23:30308080-30307830 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 175-438 |
| Cow position: | chr23:37223895-37224150 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 176-372 |
| Cow position: | chr23:21847932-21847730 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 182-430 |
| Cow position: | chr23:28894784-28895030 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 124, 119 |
| Conread position: | 192-335 |
| Cow position: | chr23:23471070-23470927 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 100, 125 |
| Conread position: | 192-377 |
| Cow position: | chr23:40651311-40651504 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 194-431 |
| Cow position: | chr23:16072185-16072400 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 196-420 |
| Cow position: | chr23:17092340-17092561 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 96, 165 |
| Conread position: | 196-438 |
| Cow position: | chr23:11434104-11434341 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 196-438 |
| Cow position: | chr23:15872535-15872779 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 198-422 |
| Cow position: | chr23:35497875-35498092 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 199-438 |
| Cow position: | chr23:40862498-40862261 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 200-438 |
| Cow position: | chr23:17000858-17000625 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 201-340 |
| Cow position: | chr23:39117857-39117993 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 201-427 |
| Cow position: | chr23:1677545-1677327 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 11 |
| Conread position: | 207-373 |
| Cow position: | chr23:6667597-6667442 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 214-427 |
| Cow position: | chr23:30210209-30210413 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 223-370 |
| Cow position: | chr23:13320067-13319923 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 242-427 |
| Cow position: | chr23:20753118-20752944 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 244-391 |
| Cow position: | chr23:40525874-40526025 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 258-427 |
| Cow position: | chr23:14543129-14543292 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 260-372 |
| Cow position: | chr23:23975003-23974895 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.