Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 144-293 |
| Cow position: | chr24:31339032-31338884 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 149-376 |
| Cow position: | chr24:10546247-10546019 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 160-377 |
| Cow position: | chr24:28279789-28279569 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 46 |
| Conread position: | 160-438 |
| Cow position: | chr24:40091420-40091683 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 164-315 |
| Cow position: | chr24:41332420-41332577 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 165-293 |
| Cow position: | chr24:15909782-15909653 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 166-351 |
| Cow position: | chr24:38292015-38291832 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 166-427 |
| Cow position: | chr24:31258180-31258432 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 167-284 |
| Cow position: | chr24:41998920-41999036 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 167-285 |
| Cow position: | chr24:3013137-3013254 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 167-345 |
| Cow position: | chr24:16481155-16481326 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 134, 98 |
| Conread position: | 167-381 |
| Cow position: | chr24:40809208-40809420 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 143, 55 |
| Conread position: | 167-413 |
| Cow position: | chr24:22888751-22888507 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 167-427 |
| Cow position: | chr24:14746803-14746538 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 167-427 |
| Cow position: | chr24:15617316-15617567 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 135, 74 |
| Conread position: | 167-438 |
| Cow position: | chr24:23824274-23824533 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 171-299 |
| Cow position: | chr24:32059303-32059428 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 171-402 |
| Cow position: | chr24:42681881-42681658 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 171-438 |
| Cow position: | chr24:30860789-30860528 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 172-339 |
| Cow position: | chr24:41458267-41458104 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 172-427 |
| Cow position: | chr24:27054561-27054312 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 173-344 |
| Cow position: | chr24:36497583-36497754 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 125, 143 |
| Conread position: | 173-359 |
| Cow position: | chr24:21041791-21041974 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 173-380 |
| Cow position: | chr24:42942966-42943178 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 89 |
| Conread position: | 173-427 |
| Cow position: | chr24:19754731-19754476 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 173-427 |
| Cow position: | chr24:35827896-35827639 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 173-427 |
| Cow position: | chr24:36801528-36801284 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 173-427 |
| Cow position: | chr24:39350072-39350314 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 173-437 |
| Cow position: | chr24:34368854-34369115 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 123, 68 |
| Conread position: | 173-438 |
| Cow position: | chr24:2970454-2970715 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 193 |
| Conread position: | 173-438 |
| Cow position: | chr24:31776879-31776631 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 174-374 |
| Cow position: | chr24:6427855-6427652 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 174-377 |
| Cow position: | chr24:33290168-33290369 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 129, 67 |
| Conread position: | 174-408 |
| Cow position: | chr24:2143901-2143675 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 97 |
| Conread position: | 174-426 |
| Cow position: | chr24:7079935-7079696 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 174-426 |
| Cow position: | chr24:17981337-17981095 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 118, 138 |
| Conread position: | 174-427 |
| Cow position: | chr24:18786777-18787015 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 174-427 |
| Cow position: | chr24:32158123-32158371 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 91, 144 |
| Conread position: | 174-430 |
| Cow position: | chr24:16399289-16399531 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 100, 16 |
| Conread position: | 174-436 |
| Cow position: | chr24:31378900-31378651 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 174-438 |
| Cow position: | chr24:32758610-32758868 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 175-339 |
| Cow position: | chr24:41483143-41482981 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 39 |
| Conread position: | 175-427 |
| Cow position: | chr24:1438121-1438369 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 175-427 |
| Cow position: | chr24:24311653-24311409 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 176-374 |
| Cow position: | chr24:16055361-16055563 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 118, 178 |
| Conread position: | 176-427 |
| Cow position: | chr24:27633549-27633311 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 149, 97 |
| Conread position: | 179-396 |
| Cow position: | chr24:28349730-28349502 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 52, 189 |
| Conread position: | 179-431 |
| Cow position: | chr24:11201496-11201746 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 180-427 |
| Cow position: | chr24:28335417-28335664 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 181-430 |
| Cow position: | chr24:6507625-6507867 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 108, 144 |
| Conread position: | 181-438 |
| Cow position: | chr24:14337873-14337624 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 181-438 |
| Cow position: | chr24:26455986-26455731 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 182-427 |
| Cow position: | chr24:6061238-6061493 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 102, 123 |
| Conread position: | 182-427 |
| Cow position: | chr24:14617801-14617559 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 183-425 |
| Cow position: | chr24:5849233-5849489 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 109, 174 |
| Conread position: | 184-426 |
| Cow position: | chr24:25165177-25164938 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 102, 183 |
| Conread position: | 185-427 |
| Cow position: | chr24:39681991-39681758 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 107, 40 |
| Conread position: | 192-368 |
| Cow position: | chr24:23176566-23176744 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 194-377 |
| Cow position: | chr24:39742947-39742760 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 141 |
| Conread position: | 200-379 |
| Cow position: | chr24:35530028-35529857 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 205-427 |
| Cow position: | chr24:19612128-19611914 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 87, 111 |
| Conread position: | 206-389 |
| Cow position: | chr24:12452904-12452717 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 214-392 |
| Cow position: | chr24:1271777-1271952 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 107 |
| Conread position: | 224-430 |
| Cow position: | chr24:41962997-41963199 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 231-438 |
| Cow position: | chr24:12263618-12263821 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 142 |
| Conread position: | 234-422 |
| Cow position: | chr24:32085838-32086022 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 61, 146 |
| Conread position: | 235-435 |
| Cow position: | chr24:27900818-27900622 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 248-433 |
| Cow position: | chr24:24495762-24495939 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 249-377 |
| Cow position: | chr24:27683379-27683512 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 249-425 |
| Cow position: | chr24:18567441-18567611 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 253-438 |
| Cow position: | chr24:36713828-36713645 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 267-438 |
| Cow position: | chr24:18393464-18393634 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 297-427 |
| Cow position: | chr24:23685042-23685166 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 77 |
Show alignments to all cow chromosomes.