Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 155-438 |
| Cow position: | chr25:18000337-18000616 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 158-365 |
| Cow position: | chr25:41093947-41094157 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 140, 117 |
| Conread position: | 160-427 |
| Cow position: | chr25:8511904-8512164 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 174 |
| Conread position: | 163-427 |
| Cow position: | chr25:34970640-34970390 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 38 |
| Conread position: | 164-438 |
| Cow position: | chr25:33204901-33205167 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 166-427 |
| Cow position: | chr25:5407914-5407665 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 167-294 |
| Cow position: | chr25:22601469-22601342 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-377 |
| Cow position: | chr25:17701811-17702028 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 167-384 |
| Cow position: | chr25:22575348-22575565 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 167-419 |
| Cow position: | chr25:33246094-33245855 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 167-427 |
| Cow position: | chr25:27534738-27534993 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 167-427 |
| Cow position: | chr25:34378915-34379182 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 170-380 |
| Cow position: | chr25:6178212-6177997 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 114, 145 |
| Conread position: | 171-321 |
| Cow position: | chr25:9109516-9109364 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 94 |
| Conread position: | 171-326 |
| Cow position: | chr25:18228353-18228201 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 151, 100 |
| Conread position: | 171-371 |
| Cow position: | chr25:13321355-13321153 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 171-422 |
| Cow position: | chr25:20624760-20625003 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 59 |
| Conread position: | 171-427 |
| Cow position: | chr25:23410836-23410590 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 171-438 |
| Cow position: | chr25:20076675-20076406 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 115, 202 |
| Conread position: | 172-264 |
| Cow position: | chr25:21422434-21422344 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-293 |
| Cow position: | chr25:37845457-37845336 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-373 |
| Cow position: | chr25:18448987-18448783 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 83 |
| Conread position: | 172-427 |
| Cow position: | chr25:40956811-40957061 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 173-350 |
| Cow position: | chr25:15025083-15024905 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 62 |
| Conread position: | 173-377 |
| Cow position: | chr25:40339055-40338856 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 172, 29 |
| Conread position: | 173-437 |
| Cow position: | chr25:24136270-24136521 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 173-438 |
| Cow position: | chr25:14075478-14075216 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 123, 68 |
| Conread position: | 174-374 |
| Cow position: | chr25:20428492-20428288 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 102, 56 |
| Conread position: | 174-380 |
| Cow position: | chr25:30021247-30021037 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 174-381 |
| Cow position: | chr25:4716430-4716224 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 117, 171 |
| Conread position: | 174-387 |
| Cow position: | chr25:18239685-18239466 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 174-397 |
| Cow position: | chr25:19524270-19524480 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 174-425 |
| Cow position: | chr25:18266336-18266088 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 174-427 |
| Cow position: | chr25:8576867-8576612 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 113, 69 |
| Conread position: | 174-427 |
| Cow position: | chr25:26457503-26457754 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 194 |
| Conread position: | 175-425 |
| Cow position: | chr25:36501067-36501308 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 112, 183 |
| Conread position: | 175-427 |
| Cow position: | chr25:24405560-24405809 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 199 |
| Conread position: | 176-355 |
| Cow position: | chr25:12932798-12932614 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 111, 65 |
| Conread position: | 179-350 |
| Cow position: | chr25:5365701-5365522 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 179-429 |
| Cow position: | chr25:26240708-26240462 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 186 |
| Conread position: | 179-431 |
| Cow position: | chr25:23248572-23248815 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 181-420 |
| Cow position: | chr25:29312170-29312407 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 182-436 |
| Cow position: | chr25:13560048-13560295 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 183-377 |
| Cow position: | chr25:14466934-14467124 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 183-438 |
| Cow position: | chr25:33691715-33691471 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 184-345 |
| Cow position: | chr25:13048814-13048969 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 185-426 |
| Cow position: | chr25:13562595-13562363 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 190-427 |
| Cow position: | chr25:18161440-18161212 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 192-422 |
| Cow position: | chr25:15368850-15368621 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 192-427 |
| Cow position: | chr25:8080882-8080649 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 192-427 |
| Cow position: | chr25:20811219-20811445 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 201-374 |
| Cow position: | chr25:10011912-10012087 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 201-427 |
| Cow position: | chr25:14570519-14570298 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 70 |
| Conread position: | 201-427 |
| Cow position: | chr25:33111833-33112041 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 204-438 |
| Cow position: | chr25:10748356-10748581 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 223, 99 |
| Conread position: | 212-426 |
| Cow position: | chr25:22909724-22909930 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 215-438 |
| Cow position: | chr25:16691790-16691577 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 226-384 |
| Cow position: | chr25:22542691-22542847 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 243-430 |
| Cow position: | chr25:16560068-16560252 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 249-430 |
| Cow position: | chr25:17365168-17365338 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 253-422 |
| Cow position: | chr25:13727292-13727455 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 266-427 |
| Cow position: | chr25:9519402-9519245 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 313-438 |
| Cow position: | chr25:107053-107171 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 114, 59 |
Show alignments to all cow chromosomes.