Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 157-345 |
| Cow position: | chr26:3186759-3186564 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 164-261 |
| Cow position: | chr26:7102561-7102658 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-438 |
| Cow position: | chr26:10292797-10292521 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 28 |
| Conread position: | 165-426 |
| Cow position: | chr26:29244597-29244345 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 112, 48 |
| Conread position: | 166-427 |
| Cow position: | chr26:9064535-9064286 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 61 |
| Conread position: | 166-427 |
| Cow position: | chr26:18719455-18719200 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 201 |
| Conread position: | 167-427 |
| Cow position: | chr26:15564371-15564628 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 124, 99 |
| Conread position: | 167-438 |
| Cow position: | chr26:782733-782998 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 134, 37 |
| Conread position: | 170-378 |
| Cow position: | chr26:12579816-12580026 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 170 |
| Conread position: | 170-438 |
| Cow position: | chr26:19111109-19110843 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 171-360 |
| Cow position: | chr26:12652048-12652242 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 171-379 |
| Cow position: | chr26:10523257-10523464 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 171-438 |
| Cow position: | chr26:9632168-9632437 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 171-438 |
| Cow position: | chr26:16604488-16604217 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 206 |
| Conread position: | 172-425 |
| Cow position: | chr26:21860016-21859768 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 115, 61 |
| Conread position: | 173-278 |
| Cow position: | chr26:15615100-15614994 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 173-299 |
| Cow position: | chr26:12752616-12752494 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 173-310 |
| Cow position: | chr26:19332812-19332951 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 173-373 |
| Cow position: | chr26:2196397-2196601 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 113, 158 |
| Conread position: | 173-376 |
| Cow position: | chr26:6470081-6470287 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 173-388 |
| Cow position: | chr26:14080897-14080681 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 115, 32 |
| Conread position: | 173-420 |
| Cow position: | chr26:9101918-9102164 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 93, 189 |
| Conread position: | 173-427 |
| Cow position: | chr26:2769648-2769895 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 173-427 |
| Cow position: | chr26:32215640-32215388 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 173-438 |
| Cow position: | chr26:9666222-9666477 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 174-293 |
| Cow position: | chr26:12569646-12569760 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 174-299 |
| Cow position: | chr26:25241820-25241695 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-315 |
| Cow position: | chr26:6299612-6299471 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-359 |
| Cow position: | chr26:10137549-10137737 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 126, 81 |
| Conread position: | 174-372 |
| Cow position: | chr26:24182860-24183052 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 174-374 |
| Cow position: | chr26:28789934-28790131 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 141, 30 |
| Conread position: | 174-377 |
| Cow position: | chr26:12217038-12216844 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 174-426 |
| Cow position: | chr26:12520221-12519965 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 229 |
| Conread position: | 174-426 |
| Cow position: | chr26:27585965-27585720 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 143 |
| Conread position: | 174-427 |
| Cow position: | chr26:11567785-11568026 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 174-427 |
| Cow position: | chr26:17203950-17204203 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 174-427 |
| Cow position: | chr26:21577907-21578143 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 243, 129 |
| Conread position: | 174-436 |
| Cow position: | chr26:7956041-7955788 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 30 |
| Conread position: | 174-438 |
| Cow position: | chr26:14924675-14924417 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 175-384 |
| Cow position: | chr26:32865699-32865914 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 175-430 |
| Cow position: | chr26:12669390-12669139 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 123, 71 |
| Conread position: | 176-420 |
| Cow position: | chr26:8651420-8651660 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 118, 7 |
| Conread position: | 181-384 |
| Cow position: | chr26:3756403-3756204 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 182-322 |
| Cow position: | chr26:2246181-2246041 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 182-426 |
| Cow position: | chr26:33194812-33194591 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 182-430 |
| Cow position: | chr26:7162226-7162474 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 183-382 |
| Cow position: | chr26:16113002-16113209 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 189-427 |
| Cow position: | chr26:19903558-19903324 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 105, 82 |
| Conread position: | 191-299 |
| Cow position: | chr26:13843449-13843558 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 196-427 |
| Cow position: | chr26:17289366-17289151 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 198-378 |
| Cow position: | chr26:19935192-19935371 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 100, 119 |
| Conread position: | 198-427 |
| Cow position: | chr26:3019248-3019472 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 99, 129 |
| Conread position: | 201-349 |
| Cow position: | chr26:7387933-7387780 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 201-355 |
| Cow position: | chr26:19768639-19768799 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 202-384 |
| Cow position: | chr26:31466844-31466661 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 202-427 |
| Cow position: | chr26:17155164-17155378 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 101, 58 |
| Conread position: | 212-427 |
| Cow position: | chr26:30605212-30605415 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 215-391 |
| Cow position: | chr26:34118882-34119064 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 219-427 |
| Cow position: | chr26:34169038-34169241 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 75, 131 |
| Conread position: | 223-438 |
| Cow position: | chr26:29353364-29353574 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 148 |
| Conread position: | 241-373 |
| Cow position: | chr26:5783546-5783408 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.