Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 160-311 |
| Cow position: | chr27:31339985-31339832 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 160-337 |
| Cow position: | chr27:6347986-6347807 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 160-427 |
| Cow position: | chr27:20766187-20765926 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 109, 159 |
| Conread position: | 160-431 |
| Cow position: | chr27:22108441-22108176 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 163-425 |
| Cow position: | chr27:27842126-27841879 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 164-291 |
| Cow position: | chr27:7983333-7983206 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-298 |
| Cow position: | chr27:18028384-18028516 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-377 |
| Cow position: | chr27:19544148-19543932 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 166-438 |
| Cow position: | chr27:15524035-15523761 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 197 |
| Conread position: | 167-290 |
| Cow position: | chr27:11322381-11322499 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 167-292 |
| Cow position: | chr27:19057020-19056895 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 167-297 |
| Cow position: | chr27:23830950-23830823 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 167-319 |
| Cow position: | chr27:1899798-1899642 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 131, 50 |
| Conread position: | 167-374 |
| Cow position: | chr27:13958570-13958359 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 167-381 |
| Cow position: | chr27:13005622-13005835 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 148 |
| Conread position: | 167-398 |
| Cow position: | chr27:24341675-24341911 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 36, 195 |
| Conread position: | 167-412 |
| Cow position: | chr27:13970606-13970374 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 137, 90 |
| Conread position: | 167-422 |
| Cow position: | chr27:16493359-16493602 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 167-435 |
| Cow position: | chr27:24225123-24224854 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 167-438 |
| Cow position: | chr27:30811229-30811492 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 171-290 |
| Cow position: | chr27:26898884-26898767 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 171-427 |
| Cow position: | chr27:26492920-26492673 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 10, 93 |
| Conread position: | 171-438 |
| Cow position: | chr27:24509602-24509858 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 172-427 |
| Cow position: | chr27:27053083-27053324 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 172-438 |
| Cow position: | chr27:19083939-19083673 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 203 |
| Conread position: | 173-324 |
| Cow position: | chr27:17875363-17875207 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 173-365 |
| Cow position: | chr27:10119304-10119103 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 173-424 |
| Cow position: | chr27:14937650-14937402 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 68 |
| Conread position: | 173-426 |
| Cow position: | chr27:6159767-6160009 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 173-427 |
| Cow position: | chr27:1536948-1536689 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 208 |
| Conread position: | 173-427 |
| Cow position: | chr27:8048952-8048714 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 173-431 |
| Cow position: | chr27:19601154-19601411 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 140, 35 |
| Conread position: | 173-438 |
| Cow position: | chr27:8430660-8430397 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 153 |
| Conread position: | 174-303 |
| Cow position: | chr27:1085167-1085042 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 174-348 |
| Cow position: | chr27:11746368-11746547 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 174-354 |
| Cow position: | chr27:16526061-16525880 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 124, 143 |
| Conread position: | 174-377 |
| Cow position: | chr27:25982938-25982739 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 174-380 |
| Cow position: | chr27:15319246-15319447 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 174-381 |
| Cow position: | chr27:25970187-25970391 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 97 |
| Conread position: | 174-427 |
| Cow position: | chr27:12244346-12244097 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 174-427 |
| Cow position: | chr27:29039160-29038911 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 174-430 |
| Cow position: | chr27:12247467-12247708 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 174-437 |
| Cow position: | chr27:25998486-25998743 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 174-438 |
| Cow position: | chr27:490684-490937 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 251, 5 |
| Conread position: | 175-373 |
| Cow position: | chr27:23662812-23662613 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 144 |
| Conread position: | 175-383 |
| Cow position: | chr27:21578794-21578579 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 175-436 |
| Cow position: | chr27:2354981-2354729 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 62 |
| Conread position: | 175-436 |
| Cow position: | chr27:30446957-30447216 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 176-356 |
| Cow position: | chr27:25879884-25880068 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 148 |
| Conread position: | 176-427 |
| Cow position: | chr27:11356749-11356511 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 180-319 |
| Cow position: | chr27:1674935-1675070 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 180-427 |
| Cow position: | chr27:6453994-6454239 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 180-438 |
| Cow position: | chr27:26441262-26441020 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 247, 123 |
| Conread position: | 181-314 |
| Cow position: | chr27:9692230-9692095 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 181-391 |
| Cow position: | chr27:30365105-30365317 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 183-438 |
| Cow position: | chr27:26161293-26161543 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 115, 83 |
| Conread position: | 184-438 |
| Cow position: | chr27:783496-783743 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 136, 57 |
| Conread position: | 191-363 |
| Cow position: | chr27:21991328-21991511 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 197-356 |
| Cow position: | chr27:24333814-24333655 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 116 |
| Conread position: | 199-373 |
| Cow position: | chr27:21971077-21970903 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 166 |
| Conread position: | 199-429 |
| Cow position: | chr27:21681520-21681294 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 67 |
| Conread position: | 200-373 |
| Cow position: | chr27:19909174-19909358 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 172 |
| Conread position: | 202-370 |
| Cow position: | chr27:3688396-3688230 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 211-389 |
| Cow position: | chr27:13977729-13977545 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 214-338 |
| Cow position: | chr27:18219217-18219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 103 |
| Conread position: | 216-377 |
| Cow position: | chr27:6883855-6884021 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 125 |
| Conread position: | 251-438 |
| Cow position: | chr27:25471005-25471180 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.