Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 160-299 |
| Cow position: | chr28:20308291-20308149 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 162-391 |
| Cow position: | chr28:20275318-20275089 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 27 |
| Conread position: | 163-438 |
| Cow position: | chr28:5474840-5475109 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 185, 93 |
| Conread position: | 164-427 |
| Cow position: | chr28:1202056-1202307 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 166-391 |
| Cow position: | chr28:11180976-11181202 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 166-427 |
| Cow position: | chr28:11500703-11500953 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 40 |
| Conread position: | 167-299 |
| Cow position: | chr28:12942636-12942502 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 167-374 |
| Cow position: | chr28:8789340-8789134 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 167-374 |
| Cow position: | chr28:31373293-31373086 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 135, 39 |
| Conread position: | 167-424 |
| Cow position: | chr28:4274657-4274904 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 167-427 |
| Cow position: | chr28:3769476-3769735 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 167-427 |
| Cow position: | chr28:31165794-31166052 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 199 |
| Conread position: | 170-430 |
| Cow position: | chr28:11007382-11007121 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 171-365 |
| Cow position: | chr28:23703590-23703392 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 87 |
| Conread position: | 171-377 |
| Cow position: | chr28:11200705-11200907 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 171-389 |
| Cow position: | chr28:17362417-17362637 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 165 |
| Conread position: | 171-438 |
| Cow position: | chr28:20963343-20963611 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 205 |
| Conread position: | 173-374 |
| Cow position: | chr28:1608372-1608164 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 33 |
| Conread position: | 173-377 |
| Cow position: | chr28:24500389-24500178 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 173-438 |
| Cow position: | chr28:23668603-23668864 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 173-438 |
| Cow position: | chr28:25825683-25825948 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 174-318 |
| Cow position: | chr28:17624990-17625140 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 174-359 |
| Cow position: | chr28:28513664-28513481 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 174-360 |
| Cow position: | chr28:3822960-3823145 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 174-389 |
| Cow position: | chr28:9294311-9294531 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 112, 188 |
| Conread position: | 174-427 |
| Cow position: | chr28:19253659-19253413 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 129, 32 |
| Conread position: | 174-427 |
| Cow position: | chr28:34198928-34199174 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 174-436 |
| Cow position: | chr28:15678068-15677813 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 115 |
| Conread position: | 174-436 |
| Cow position: | chr28:33284928-33285191 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 201 |
| Conread position: | 174-437 |
| Cow position: | chr28:25797300-25797042 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 174-438 |
| Cow position: | chr28:5406723-5406475 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 124, 33 |
| Conread position: | 174-438 |
| Cow position: | chr28:6643099-6643363 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 65, 199 |
| Conread position: | 174-438 |
| Cow position: | chr28:15081745-15082003 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 124, 30 |
| Conread position: | 174-438 |
| Cow position: | chr28:21570357-21570110 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 175-371 |
| Cow position: | chr28:6993437-6993632 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 175-427 |
| Cow position: | chr28:12999274-12999030 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 176-427 |
| Cow position: | chr28:2517641-2517879 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 176-427 |
| Cow position: | chr28:7539979-7540226 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 69 |
| Conread position: | 176-427 |
| Cow position: | chr28:9821797-9822043 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 127, 34 |
| Conread position: | 176-431 |
| Cow position: | chr28:32366073-32366310 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 105, 28 |
| Conread position: | 179-326 |
| Cow position: | chr28:31971613-31971758 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 179-438 |
| Cow position: | chr28:4764053-4763796 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 179-438 |
| Cow position: | chr28:18934630-18934373 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 180-438 |
| Cow position: | chr28:9237489-9237235 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 180-438 |
| Cow position: | chr28:25564258-25564002 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 181-359 |
| Cow position: | chr28:16041050-16041226 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 181-382 |
| Cow position: | chr28:14508194-14508404 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 182-438 |
| Cow position: | chr28:9176586-9176834 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 41 |
| Conread position: | 182-438 |
| Cow position: | chr28:13866015-13865763 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 184-292 |
| Cow position: | chr28:22498545-22498437 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-380 |
| Cow position: | chr28:29455505-29455690 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 196-374 |
| Cow position: | chr28:25340429-25340248 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 199-406 |
| Cow position: | chr28:8336118-8335905 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 209 |
| Conread position: | 202-389 |
| Cow position: | chr28:7805268-7805460 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 211-427 |
| Cow position: | chr28:32300217-32300426 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 218-371 |
| Cow position: | chr28:21873897-21873739 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 226-357 |
| Cow position: | chr28:19133904-19133775 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 231-427 |
| Cow position: | chr28:12046788-12046983 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 251-427 |
| Cow position: | chr28:13693854-13693685 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 257-423 |
| Cow position: | chr28:4098929-4098766 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 121 |
Show alignments to all cow chromosomes.