Cow genome map
| Conread name: | rdbla0112_h19.y1 |
| Conread position: | 155-323 |
| Cow position: | chr29:9662209-9662036 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 155-430 |
| Cow position: | chr29:30350737-30351011 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 211 |
| Conread position: | 160-336 |
| Cow position: | chr29:7637372-7637547 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 160-349 |
| Cow position: | chr29:27688553-27688744 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 160-408 |
| Cow position: | chr29:29302474-29302714 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 160-426 |
| Cow position: | chr29:38758844-38759092 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 160-427 |
| Cow position: | chr29:5789226-5788934 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 160-427 |
| Cow position: | chr29:12451551-12451303 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 160-427 |
| Cow position: | chr29:18073126-18072862 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 160-438 |
| Cow position: | chr29:32655235-32655519 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 161-300 |
| Cow position: | chr29:32219127-32218990 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 163-371 |
| Cow position: | chr29:26129675-26129472 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 153, 38 |
| Conread position: | 164-339 |
| Cow position: | chr29:21012161-21012338 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 122, 37 |
| Conread position: | 164-438 |
| Cow position: | chr29:29559537-29559804 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 58 |
| Conread position: | 166-338 |
| Cow position: | chr29:18021500-18021678 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 167-384 |
| Cow position: | chr29:11766896-11766683 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 125, 39 |
| Conread position: | 167-427 |
| Cow position: | chr29:18541228-18540983 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 167-436 |
| Cow position: | chr29:34699664-34699913 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 167-438 |
| Cow position: | chr29:7054592-7054334 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 167-438 |
| Cow position: | chr29:11787967-11787710 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 167-438 |
| Cow position: | chr29:13634119-13634387 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 128, 62 |
| Conread position: | 168-428 |
| Cow position: | chr29:21675571-21675320 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 130, 45 |
| Conread position: | 171-324 |
| Cow position: | chr29:943001-942839 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 171-335 |
| Cow position: | chr29:23742088-23742254 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 54 |
| Conread position: | 172-436 |
| Cow position: | chr29:39023161-39023434 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 208 |
| Conread position: | 173-384 |
| Cow position: | chr29:34736312-34736512 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 173-399 |
| Cow position: | chr29:21174531-21174754 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 75 |
| Conread position: | 173-427 |
| Cow position: | chr29:6208236-6207991 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 113, 169 |
| Conread position: | 174-291 |
| Cow position: | chr29:42686543-42686661 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 174-316 |
| Cow position: | chr29:8794528-8794378 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 174-342 |
| Cow position: | chr29:19607350-19607523 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 174-359 |
| Cow position: | chr29:10153618-10153811 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 174-377 |
| Cow position: | chr29:7407730-7407932 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 174-387 |
| Cow position: | chr29:5976616-5976826 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 19 |
| Conread position: | 174-426 |
| Cow position: | chr29:24603959-24604211 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 174-427 |
| Cow position: | chr29:942795-942555 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 111, 30 |
| Conread position: | 174-427 |
| Cow position: | chr29:21186699-21186947 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 115, 78 |
| Conread position: | 174-427 |
| Cow position: | chr29:35442287-35442534 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 183 |
| Conread position: | 174-429 |
| Cow position: | chr29:5616693-5616945 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 117, 204 |
| Conread position: | 174-437 |
| Cow position: | chr29:21265935-21265677 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 116, 67 |
| Conread position: | 174-438 |
| Cow position: | chr29:11071512-11071784 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 127, 32 |
| Conread position: | 175-314 |
| Cow position: | chr29:32080720-32080576 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 175-436 |
| Cow position: | chr29:18963908-18963647 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 196 |
| Conread position: | 175-438 |
| Cow position: | chr29:11366407-11366150 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 175-438 |
| Cow position: | chr29:37960804-37961063 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 112, 50 |
| Conread position: | 176-377 |
| Cow position: | chr29:708958-709164 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 193 |
| Conread position: | 176-391 |
| Cow position: | chr29:22895900-22895679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 176-438 |
| Cow position: | chr29:7663100-7663357 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 179-301 |
| Cow position: | chr29:6149947-6150069 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-437 |
| Cow position: | chr29:26299139-26298891 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 100 |
| Conread position: | 179-438 |
| Cow position: | chr29:4367893-4367636 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 108, 47 |
| Conread position: | 180-425 |
| Cow position: | chr29:1340951-1340712 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 115, 98 |
| Conread position: | 181-359 |
| Cow position: | chr29:19734829-19734655 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 181-374 |
| Cow position: | chr29:40337374-40337570 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 181-438 |
| Cow position: | chr29:6772297-6772046 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 181-438 |
| Cow position: | chr29:14758692-14758948 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 5, 139 |
| Conread position: | 182-425 |
| Cow position: | chr29:4444885-4444643 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 193 |
| Conread position: | 184-438 |
| Cow position: | chr29:12900970-12901192 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 243, 22 |
| Conread position: | 184-438 |
| Cow position: | chr29:19509105-19508866 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 187-438 |
| Cow position: | chr29:17154943-17154681 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 192-427 |
| Cow position: | chr29:16054979-16055203 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 197-437 |
| Cow position: | chr29:25426507-25426742 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 198-427 |
| Cow position: | chr29:13554288-13554062 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 179 |
| Conread position: | 201-436 |
| Cow position: | chr29:9512408-9512176 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 163 |
| Conread position: | 202-436 |
| Cow position: | chr29:41083295-41083069 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 152 |
| Conread position: | 215-357 |
| Cow position: | chr29:18068038-18067894 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 215-427 |
| Cow position: | chr29:9937948-9938159 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 216-438 |
| Cow position: | chr29:25923829-25924053 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 232-438 |
| Cow position: | chr29:17543560-17543361 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 237-427 |
| Cow position: | chr29:10188171-10187981 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 101 |
| Conread position: | 249-377 |
| Cow position: | chr29:32645011-32644878 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.