Cow genome map

Conread name: rdbla0119_i21.y1

Conread position: 3-107
Cow position: chr23:4581421-4581314 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 3-136
Cow position: chr23:11405290-11405424 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 19

Conread position: 3-157
Cow position: chr23:12978149-12977996 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 77

Conread position: 3-157
Cow position: chr23:19056957-19057114 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 3-167
Cow position: chr23:4266831-4266664 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 3-169
Cow position: chr23:20541363-20541202 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 32

Conread position: 3-175
Cow position: chr23:40553727-40553902 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 36, 0

Conread position: 3-178
Cow position: chr23:2529001-2529179 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 3-183
Cow position: chr23:29446554-29446734 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 33, 102

Conread position: 3-196
Cow position: chr23:17876483-17876679 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 3-197
Cow position: chr23:4437013-4436817 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 0

Conread position: 3-210
Cow position: chr23:24098523-24098313 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-211
Cow position: chr23:8290849-8290645 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 77

Conread position: 3-213
Cow position: chr23:29459858-29460067 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 109

Conread position: 3-215
Cow position: chr23:23193036-23193247 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 92

Conread position: 3-216
Cow position: chr23:771096-771312 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-216
Cow position: chr23:29447855-29448069 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 195

Conread position: 3-218
Cow position: chr23:5624184-5624395 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 33, 15

Conread position: 3-219
Cow position: chr23:1535518-1535302 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 163

Conread position: 3-219
Cow position: chr23:11814456-11814666 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 121, 32

Conread position: 3-220
Cow position: chr23:17846386-17846173 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 94

Conread position: 3-221
Cow position: chr23:1311175-1311399 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 36, 0

Conread position: 3-221
Cow position: chr23:3167446-3167216 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 3-221
Cow position: chr23:11128413-11128193 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 3-221
Cow position: chr23:16999835-16999618 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 16

Conread position: 3-224
Cow position: chr23:416322-416099 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 29, 107

Conread position: 3-224
Cow position: chr23:671567-671343 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 3-224
Cow position: chr23:1959522-1959298 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:2023689-2023913 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:2180453-2180675 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 108

Conread position: 3-224
Cow position: chr23:2320554-2320773 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 20

Conread position: 3-224
Cow position: chr23:2408817-2409040 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 169

Conread position: 3-224
Cow position: chr23:2761293-2761070 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 3-224
Cow position: chr23:2791378-2791591 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 33, 91

Conread position: 3-224
Cow position: chr23:3549799-3550023 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:3730190-3730414 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:3877748-3877971 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 153

Conread position: 3-224
Cow position: chr23:4532302-4532526 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:4636960-4637184 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:4892091-4891867 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:5396185-5396409 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:5441312-5441089 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:6173625-6173847 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 36, 109

Conread position: 3-224
Cow position: chr23:8707786-8707562 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:10679438-10679662 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:10936901-10937131 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:11070475-11070248 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 3-224
Cow position: chr23:11079780-11079555 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 41, 0

Conread position: 3-224
Cow position: chr23:11343892-11343668 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:11376922-11377146 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:11712271-11712496 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 36, 92

Conread position: 3-224
Cow position: chr23:11782181-11781956 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:14265738-14265518 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 36, 92

Conread position: 3-224
Cow position: chr23:14959562-14959780 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 36

Conread position: 3-224
Cow position: chr23:14970559-14970780 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 77

Conread position: 3-224
Cow position: chr23:15180353-15180130 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:15215442-15215663 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 160

Conread position: 3-224
Cow position: chr23:15528982-15528758 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:16495881-16496104 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 3-224
Cow position: chr23:19493244-19493020 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:20025329-20025105 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:20152825-20153050 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 3-224
Cow position: chr23:21351556-21351777 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 69

Conread position: 3-224
Cow position: chr23:21772514-21772739 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:22143915-22144138 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 33, 192

Conread position: 3-224
Cow position: chr23:25553987-25553763 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 40, 136

Conread position: 3-224
Cow position: chr23:26828644-26828424 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 92

Conread position: 3-224
Cow position: chr23:27313240-27313016 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:27402529-27402308 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 99

Conread position: 3-224
Cow position: chr23:28915723-28915504 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 14

Conread position: 3-224
Cow position: chr23:28987737-28987514 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 36, 65

Conread position: 3-224
Cow position: chr23:29043179-29042954 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:30623106-30623326 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 3-224
Cow position: chr23:30634199-30634423 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:31605823-31605599 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:31833608-31833828 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 109

Conread position: 3-224
Cow position: chr23:33817845-33817616 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 36, 179

Conread position: 3-224
Cow position: chr23:34469013-34469235 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 109

Conread position: 3-224
Cow position: chr23:36027857-36028081 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:36308599-36308384 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 23

Conread position: 3-224
Cow position: chr23:37199115-37199342 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 3-224
Cow position: chr23:39745255-39745035 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 36, 92

Conread position: 3-224
Cow position: chr23:41015324-41015100 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 4-192
Cow position: chr23:1322002-1322191 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 106

Conread position: 4-195
Cow position: chr23:12864093-12863905 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 92, 166

Conread position: 4-224
Cow position: chr23:954406-954625 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 41, 158

Conread position: 4-224
Cow position: chr23:24119949-24119726 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 4-224
Cow position: chr23:25357740-25357517 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 35, 0

Conread position: 4-226
Cow position: chr23:4516927-4516710 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 82

Conread position: 5-131
Cow position: chr23:39389462-39389333 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 5-216
Cow position: chr23:7359849-7359640 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 107

Conread position: 6-122
Cow position: chr23:29471917-29472036 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 6-224
Cow position: chr23:5882695-5882478 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 90

Conread position: 13-221
Cow position: chr23:40890161-40889949 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 19-224
Cow position: chr23:19637518-19637720 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 153

Conread position: 22-219
Cow position: chr23:38584290-38584096 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 89

Conread position: 25-221
Cow position: chr23:21277262-21277460 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 14, 101

Conread position: 43-224
Cow position: chr23:1048520-1048702 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 43-224
Cow position: chr23:2720807-2720628 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.