Cow genome map
| Conread name: | rdbla0119_i21.y1 |
| Conread position: | 1-221 |
| Cow position: | chr27:31249633-31249417 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 1-224 |
| Cow position: | chr27:4828897-4828672 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 3-126 |
| Cow position: | chr27:791650-791776 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-161 |
| Cow position: | chr27:16332083-16332243 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-164 |
| Cow position: | chr27:15100038-15099874 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-167 |
| Cow position: | chr27:3649877-3649710 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-178 |
| Cow position: | chr27:1501909-1501732 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 3-186 |
| Cow position: | chr27:12239463-12239278 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 3-196 |
| Cow position: | chr27:344534-344730 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-204 |
| Cow position: | chr27:25112557-25112354 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 3-216 |
| Cow position: | chr27:29467324-29467110 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 3-218 |
| Cow position: | chr27:30783299-30783082 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 167 |
| Conread position: | 3-220 |
| Cow position: | chr27:18954439-18954219 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-221 |
| Cow position: | chr27:2001241-2001020 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-221 |
| Cow position: | chr27:3653304-3653525 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-221 |
| Cow position: | chr27:9262881-9263103 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-221 |
| Cow position: | chr27:22797263-22797482 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 151 |
| Conread position: | 3-221 |
| Cow position: | chr27:27557198-27556981 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 3-224 |
| Cow position: | chr27:165523-165747 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:1536565-1536342 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 160 |
| Conread position: | 3-224 |
| Cow position: | chr27:2331899-2331675 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:2681916-2681695 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 3-224 |
| Cow position: | chr27:3990404-3990628 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 215 |
| Conread position: | 3-224 |
| Cow position: | chr27:4982768-4982544 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:8201331-8201110 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 160 |
| Conread position: | 3-224 |
| Cow position: | chr27:9333063-9332850 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 3-224 |
| Cow position: | chr27:9970567-9970343 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:11481327-11481103 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:12006544-12006320 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:13309040-13308816 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:13316955-13316735 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 169 |
| Conread position: | 3-224 |
| Cow position: | chr27:13353702-13353478 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:13901520-13901296 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:14297603-14297379 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:14669586-14669369 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 175 |
| Conread position: | 3-224 |
| Cow position: | chr27:15033495-15033719 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:15272680-15272896 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 3-224 |
| Cow position: | chr27:15406018-15405800 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 3-224 |
| Cow position: | chr27:15633947-15634170 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 3-224 |
| Cow position: | chr27:15871932-15872147 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 3-224 |
| Cow position: | chr27:16031001-16031225 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:16787902-16788124 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 3-224 |
| Cow position: | chr27:19423981-19424205 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:19523313-19523536 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 147 |
| Conread position: | 3-224 |
| Cow position: | chr27:20810812-20810593 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 3-224 |
| Cow position: | chr27:21392406-21392184 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 3-224 |
| Cow position: | chr27:21451839-21451616 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 160 |
| Conread position: | 3-224 |
| Cow position: | chr27:22647236-22647460 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:24295864-24296097 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:25784366-25784581 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 3-224 |
| Cow position: | chr27:25800815-25801033 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 3-224 |
| Cow position: | chr27:26330328-26330104 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:27279110-27278883 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 3-224 |
| Cow position: | chr27:27291789-27291561 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-224 |
| Cow position: | chr27:29035986-29036208 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 3-224 |
| Cow position: | chr27:30306873-30307097 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-226 |
| Cow position: | chr27:3232138-3232364 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-226 |
| Cow position: | chr27:8972840-8972614 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-226 |
| Cow position: | chr27:14380699-14380474 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-226 |
| Cow position: | chr27:15870624-15870840 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 3-227 |
| Cow position: | chr27:8291237-8291012 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 158 |
| Conread position: | 3-233 |
| Cow position: | chr27:25971204-25971438 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 4-206 |
| Cow position: | chr27:26644868-26645064 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 4-224 |
| Cow position: | chr27:5983635-5983858 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 4-226 |
| Cow position: | chr27:2557598-2557821 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 4-226 |
| Cow position: | chr27:15866908-15867125 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 5-133 |
| Cow position: | chr27:28984163-28984032 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 5-176 |
| Cow position: | chr27:526329-526155 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 5-179 |
| Cow position: | chr27:11256292-11256462 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 129 |
| Conread position: | 5-217 |
| Cow position: | chr27:30036265-30036048 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-224 |
| Cow position: | chr27:26785211-26784994 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 6-177 |
| Cow position: | chr27:30677693-30677860 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 7-215 |
| Cow position: | chr27:21350239-21350029 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 7-220 |
| Cow position: | chr27:12282082-12281866 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 170 |
| Conread position: | 22-224 |
| Cow position: | chr27:6523902-6524106 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 159 |
| Conread position: | 24-224 |
| Cow position: | chr27:20001780-20001588 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 138 |
| Conread position: | 40-224 |
| Cow position: | chr27:9989845-9990031 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 41-221 |
| Cow position: | chr27:28051429-28051609 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 43-154 |
| Cow position: | chr27:556115-556227 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 44-215 |
| Cow position: | chr27:24055059-24054889 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 46-216 |
| Cow position: | chr27:27469183-27469352 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 54 |
Show alignments to all cow chromosomes.