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Cow genome map

           
Conread name:
           
rdbla0119_m12.y1
        

               
Conread position:
               
32-535
               

               
Cow position:
               
chr17:11664290-11664804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 346
               

               
Conread position:
               
35-535
               

               
Cow position:
               
chr17:21738582-21739100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
41-535
               

               
Cow position:
               
chr17:3389110-3388645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
42-499
               

               
Cow position:
               
chr17:3468021-3467590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
43-226
               

               
Cow position:
               
chr17:22241283-22241094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
46-456
               

               
Cow position:
               
chr17:24928755-24928338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
7, 153
               

               
Conread position:
               
47-535
               

               
Cow position:
               
chr17:20071833-20072290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 81
               

               
Conread position:
               
50-340
               

               
Cow position:
               
chr17:12959372-12959082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
50-533
               

               
Cow position:
               
chr17:18202030-18201560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
51-287
               

               
Cow position:
               
chr17:30501547-30501786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
51-348
               

               
Cow position:
               
chr17:34772776-34772469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
51-431
               

               
Cow position:
               
chr17:25616511-25616145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
51-520
               

               
Cow position:
               
chr17:43717070-43717511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr17:21744201-21743842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
57, 145
               

               
Conread position:
               
52-436
               

               
Cow position:
               
chr17:20884789-20884402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
52-530
               

               
Cow position:
               
chr17:40741921-40741436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr17:33321706-33321870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
54-361
               

               
Cow position:
               
chr17:37815927-37816236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
54-364
               

               
Cow position:
               
chr17:25126604-25126303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
54-440
               

               
Cow position:
               
chr17:32138152-32138539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
54-534
               

               
Cow position:
               
chr17:12289145-12289630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
54-535
               

               
Cow position:
               
chr17:6936417-6936880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
54-535
               

               
Cow position:
               
chr17:33288398-33288870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
55-233
               

               
Cow position:
               
chr17:27606775-27606600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
55-244
               

               
Cow position:
               
chr17:17782314-17782127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
160, 97
               

               
Conread position:
               
55-257
               

               
Cow position:
               
chr17:20881557-20881750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
55-345
               

               
Cow position:
               
chr17:21471925-21472209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
55-360
               

               
Cow position:
               
chr17:33154896-33155200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
55-363
               

               
Cow position:
               
chr17:21039819-21039516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
55-383
               

               
Cow position:
               
chr17:27730806-27730472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
55-385
               

               
Cow position:
               
chr17:36814624-36814290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
55-394
               

               
Cow position:
               
chr17:9824929-9824590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
55-412
               

               
Cow position:
               
chr17:11912244-11912594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
55-453
               

               
Cow position:
               
chr17:28468387-28467998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
55-474
               

               
Cow position:
               
chr17:9965760-9966187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
55-502
               

               
Cow position:
               
chr17:3577790-3577356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
55-533
               

               
Cow position:
               
chr17:6156294-6155827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr17:12325507-12325962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr17:15664938-15664453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr17:18490792-18490317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr17:6787201-6786985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr17:39964135-39963926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
55, 6
               

               
Conread position:
               
56-305
               

               
Cow position:
               
chr17:17035203-17034962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
56-381
               

               
Cow position:
               
chr17:24751172-24750851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
56-395
               

               
Cow position:
               
chr17:26757182-26757542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 138
               

               
Conread position:
               
57-277
               

               
Cow position:
               
chr17:21718737-21718958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
55, 113
               

               
Conread position:
               
57-287
               

               
Cow position:
               
chr17:20929504-20929270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
57-413
               

               
Cow position:
               
chr17:17193751-17193396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 182
               

               
Conread position:
               
57-513
               

               
Cow position:
               
chr17:12109067-12108611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 5
               

               
Conread position:
               
57-521
               

               
Cow position:
               
chr17:25612348-25611892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
57-533
               

               
Cow position:
               
chr17:30529283-30529750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr17:24613485-24613187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
58-499
               

               
Cow position:
               
chr17:27058290-27058733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
47, 256
               

               
Conread position:
               
58-514
               

               
Cow position:
               
chr17:24824506-24824058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 245
               

               
Conread position:
               
59-310
               

               
Cow position:
               
chr17:43315034-43315280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
59-322
               

               
Cow position:
               
chr17:21466000-21466269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 243
               

               
Conread position:
               
59-344
               

               
Cow position:
               
chr17:29995177-29995465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 96
               

               
Conread position:
               
59-534
               

               
Cow position:
               
chr17:40332036-40331554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
60-275
               

               
Cow position:
               
chr17:24895334-24895114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
60-529
               

               
Cow position:
               
chr17:13940060-13940532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
60-535
               

               
Cow position:
               
chr17:32989729-32989277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
60-535
               

               
Cow position:
               
chr17:32993370-32993829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
61-450
               

               
Cow position:
               
chr17:30728763-30728386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
61-534
               

               
Cow position:
               
chr17:15102631-15103103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 258
               

               
Conread position:
               
61-535
               

               
Cow position:
               
chr17:26818214-26818668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
62-239
               

               
Cow position:
               
chr17:9260356-9260535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
62-263
               

               
Cow position:
               
chr17:22081268-22081463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
62-267
               

               
Cow position:
               
chr17:5344876-5344666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
62-318
               

               
Cow position:
               
chr17:24841954-24841695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
62-329
               

               
Cow position:
               
chr17:19783309-19783046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
62-346
               

               
Cow position:
               
chr17:17044079-17044362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
62-402
               

               
Cow position:
               
chr17:25342485-25342827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
62-423
               

               
Cow position:
               
chr17:21325596-21325224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
62-515
               

               
Cow position:
               
chr17:1256245-1256699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr17:20801071-20800600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr17:21972874-21973347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr17:24077639-24077188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
63-318
               

               
Cow position:
               
chr17:15355189-15354931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
63-358
               

               
Cow position:
               
chr17:25800632-25800925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
63-389
               

               
Cow position:
               
chr17:12510731-12511049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr17:5768150-5767700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
64-335
               

               
Cow position:
               
chr17:9932058-9932320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
64-445
               

               
Cow position:
               
chr17:40673624-40673256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
65-245
               

               
Cow position:
               
chr17:8663760-8663575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr17:26225280-26225075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
65-302
               

               
Cow position:
               
chr17:42150640-42150405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr17:7959431-7959170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
65-343
               

               
Cow position:
               
chr17:8815439-8815164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
65-348
               

               
Cow position:
               
chr17:32332839-32333123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
65-380
               

               
Cow position:
               
chr17:1025586-1025885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
65-450
               

               
Cow position:
               
chr17:25118137-25117758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr17:16371514-16371036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 133
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr17:29084420-29083991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr17:38615218-38614740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
66-327
               

               
Cow position:
               
chr17:35193566-35193833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
66-534
               

               
Cow position:
               
chr17:7810496-7810954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 240
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr17:6424006-6423545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr17:20157859-20157401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr17:30713597-30713137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr17:36275587-36275141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 228
               

               
Conread position:
               
67-363
               

               
Cow position:
               
chr17:18934505-18934209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
67-445
               

               
Cow position:
               
chr17:11962284-11962679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 102
               

               
Conread position:
               
67-487
               

               
Cow position:
               
chr17:12306146-12306563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
67-535
               

               
Cow position:
               
chr17:24883321-24883780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
68-271
               

               
Cow position:
               
chr17:15728717-15728518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
68-394
               

               
Cow position:
               
chr17:25709966-25709626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
68-461
               

               
Cow position:
               
chr17:4105743-4106132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
68-461
               

               
Cow position:
               
chr17:4121478-4121868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
68-535
               

               
Cow position:
               
chr17:21003582-21004047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
70-313
               

               
Cow position:
               
chr17:26637609-26637856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
70-533
               

               
Cow position:
               
chr17:12929281-12929757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
71-268
               

               
Cow position:
               
chr17:10016523-10016327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
71-412
               

               
Cow position:
               
chr17:25513872-25514220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 221
               

               
Conread position:
               
71-530
               

               
Cow position:
               
chr17:4225240-4225702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
71-535
               

               
Cow position:
               
chr17:24587868-24587402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
72-535
               

               
Cow position:
               
chr17:24786780-24787237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
73-252
               

               
Cow position:
               
chr17:20836334-20836155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
73-263
               

               
Cow position:
               
chr17:7711680-7711490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
73-267
               

               
Cow position:
               
chr17:12215009-12215209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
73-272
               

               
Cow position:
               
chr17:44234489-44234294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
73-288
               

               
Cow position:
               
chr17:946600-946385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
73-337
               

               
Cow position:
               
chr17:25473037-25473300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
73-339
               

               
Cow position:
               
chr17:33164576-33164839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
73-359
               

               
Cow position:
               
chr17:40412823-40412544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
73-366
               

               
Cow position:
               
chr17:25511486-25511194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
73-367
               

               
Cow position:
               
chr17:22051347-22051644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
73-374
               

               
Cow position:
               
chr17:5372288-5372588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
73-383
               

               
Cow position:
               
chr17:40639191-40638882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
73-386
               

               
Cow position:
               
chr17:3153324-3153642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 231
               

               
Conread position:
               
73-392
               

               
Cow position:
               
chr17:29026320-29025991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
73-415
               

               
Cow position:
               
chr17:35573991-35573663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
73-457
               

               
Cow position:
               
chr17:31037133-31037522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
73-461
               

               
Cow position:
               
chr17:1634247-1634631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
73-504
               

               
Cow position:
               
chr17:908983-908562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:12536229-12536658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
73-528
               

               
Cow position:
               
chr17:25128110-25128558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
73-530
               

               
Cow position:
               
chr17:11831874-11832347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr17:28284792-28285242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr17:29714970-29715402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr17:34948881-34948424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chr17:37340788-37341053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
74-382
               

               
Cow position:
               
chr17:39606665-39606362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 69
               

               
Conread position:
               
75-337
               

               
Cow position:
               
chr17:5421923-5421655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
75-359
               

               
Cow position:
               
chr17:5288406-5288124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
75-442
               

               
Cow position:
               
chr17:4299700-4300045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
75-515
               

               
Cow position:
               
chr17:24490783-24490326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
75-533
               

               
Cow position:
               
chr17:20022272-20022731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr17:24004615-24004179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr17:33933506-33933953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
76-273
               

               
Cow position:
               
chr17:21677132-21676933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
77-462
               

               
Cow position:
               
chr17:7143097-7142717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
79-268
               

               
Cow position:
               
chr17:5027227-5027412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
79-436
               

               
Cow position:
               
chr17:45296644-45296313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
79-530
               

               
Cow position:
               
chr17:25901446-25900988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 365
               

               
Conread position:
               
81-289
               

               
Cow position:
               
chr17:36432135-36431923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
81-535
               

               
Cow position:
               
chr17:21114719-21115164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
82-482
               

               
Cow position:
               
chr17:1562556-1562936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr17:24163266-24163020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
88-378
               

               
Cow position:
               
chr17:26574993-26575291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
89-262
               

               
Cow position:
               
chr17:24767060-24767234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
89-339
               

               
Cow position:
               
chr17:10023283-10023032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
89-456
               

               
Cow position:
               
chr17:21414602-21414976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
89-456
               

               
Cow position:
               
chr17:21437085-21437459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
89-504
               

               
Cow position:
               
chr17:1063396-1063005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
89-533
               

               
Cow position:
               
chr17:32471560-32472005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
89-535
               

               
Cow position:
               
chr17:25097672-25097247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
90-533
               

               
Cow position:
               
chr17:36330740-36331180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
97-423
               

               
Cow position:
               
chr17:40852188-40851875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
100-535
               

               
Cow position:
               
chr17:18473380-18472963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
104-265
               

               
Cow position:
               
chr17:25348577-25348419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
104-529
               

               
Cow position:
               
chr17:34078898-34079308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
109-434
               

               
Cow position:
               
chr17:25594489-25594822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
111-502
               

               
Cow position:
               
chr17:36203280-36203672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 80
               

               
Conread position:
               
114-534
               

               
Cow position:
               
chr17:18108886-18109301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
115-393
               

               
Cow position:
               
chr17:40406647-40406366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr17:29363178-29363579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr17:29157600-29157243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
140-533
               

               
Cow position:
               
chr17:35126882-35126500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
143-299
               

               
Cow position:
               
chr17:29075913-29076066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
153-535
               

               
Cow position:
               
chr17:1410075-1410457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
155-363
               

               
Cow position:
               
chr17:22016927-22017135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
151, 56
               

               
Conread position:
               
163-402
               

               
Cow position:
               
chr17:27202891-27203131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
166-439
               

               
Cow position:
               
chr17:33657918-33658190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
167-402
               

               
Cow position:
               
chr17:23516793-23517029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
167-512
               

               
Cow position:
               
chr17:552817-553163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr17:19891773-19891399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr17:40421820-40421453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 219
               

               
Conread position:
               
169-291
               

               
Cow position:
               
chr17:18109401-18109524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
169-495
               

               
Cow position:
               
chr17:12591322-12590988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 284
               

               
Conread position:
               
169-530
               

               
Cow position:
               
chr17:39736322-39735975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chr17:24554144-24553790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr17:15340604-15340945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr17:17406283-17405922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
171-399
               

               
Cow position:
               
chr17:2275616-2275391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
171-524
               

               
Cow position:
               
chr17:41891916-41892276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
171-535
               

               
Cow position:
               
chr17:5422923-5423287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 238
               

               
Conread position:
               
172-533
               

               
Cow position:
               
chr17:11172471-11172829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
172-534
               

               
Cow position:
               
chr17:18592587-18592224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
173-339
               

               
Cow position:
               
chr17:18848014-18848183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
175-334
               

               
Cow position:
               
chr17:11478911-11478748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
177-398
               

               
Cow position:
               
chr17:11368710-11368933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 194
               

               
Conread position:
               
177-533
               

               
Cow position:
               
chr17:30718278-30718633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 284
               

               
Conread position:
               
178-535
               

               
Cow position:
               
chr17:3503720-3503364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
184-429
               

               
Cow position:
               
chr17:23798413-23798168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 6
               

               
Conread position:
               
187-528
               

               
Cow position:
               
chr17:38647191-38646859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 241
               

               
Conread position:
               
189-535
               

               
Cow position:
               
chr17:43141581-43141936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 264
               

               
Conread position:
               
190-475
               

               
Cow position:
               
chr17:4968239-4967955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
191-320
               

               
Cow position:
               
chr17:32192727-32192857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
196-535
               

               
Cow position:
               
chr17:924000-923664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
201-517
               

               
Cow position:
               
chr17:34596056-34595742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
203-334
               

               
Cow position:
               
chr17:21793739-21793870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
203-388
               

               
Cow position:
               
chr17:21478808-21478995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
206-394
               

               
Cow position:
               
chr17:39715271-39715079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
206-533
               

               
Cow position:
               
chr17:25541706-25542026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
207-456
               

               
Cow position:
               
chr17:36500912-36500664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
209-340
               

               
Cow position:
               
chr17:35140989-35141121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-461
               

               
Cow position:
               
chr17:21917766-21918020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
212-382
               

               
Cow position:
               
chr17:12880700-12880534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
212-525
               

               
Cow position:
               
chr17:21335588-21335904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 99
               

               
Conread position:
               
212-535
               

               
Cow position:
               
chr17:18860617-18860935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 200
               

               
Conread position:
               
214-439
               

               
Cow position:
               
chr17:7137081-7136858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
230-535
               

               
Cow position:
               
chr17:15333624-15333926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 210
               

               
Conread position:
               
238-535
               

               
Cow position:
               
chr17:5733390-5733664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chr17:10510586-10510828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 222
               

               
Conread position:
               
247-529
               

               
Cow position:
               
chr17:33290741-33291019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 84
               
Show alignments to all cow chromosomes.